| RVdb StrainID | ANM00015 | GenBank Accession | ON729333.1 |
| Species | RVA | Sequence Length | 7023 nt |
| Serotype | 21 Checked by RVdb | Serotype (GenBank) | 21 |
| Definition | Rhinovirus A21 strain SC378, complete genome | GenBank Submission Date | 2022-07-20 |
| Strain Name | SC378 | Sampling Date | 2017 |
| Sampling Country | USA | Sampling location | Seattle, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 44128 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQA007811 | 1A (VP4) | 538 | 744 | 0 | 0 | 207 | |
| SQA007812 | 1B (VP2) | 745 | 1524 | 0 | 0 | 780 | |
| SQA007813 | 1C (VP3) | 1525 | 2247 | 0 | 0 | 723 | |
| SQA007814 | 1D (VP1) | 2248 | 3108 | 0 | 0 | 861 | |
| SQA007815 | 2A (P2-A) | 3109 | 3534 | 0 | 0 | 426 | |
| SQA007816 | 2B (P2-B) | 3535 | 3819 | 0 | 0 | 285 | |
| SQA007817 | 2C (P2-C) | 3820 | 4785 | 0 | 0 | 966 | |
| SQA007818 | 3A (P3-A) | 4786 | 5016 | 0 | 0 | 231 | |
| SQA007819 | 3B (VPg) | 5017 | 5079 | 0 | 0 | 63 | |
| SQA007820 | protease 3C | 5080 | 5628 | 0 | 0 | 549 | |
| SQA007821 | 3D | 5629 | 7008 | 0 | 0 | 1380 | |
| SQA007822 | 5'UTR | 1 | 537 | 1 | 0 | 537 | |
| SQA007823 | CDS | 538 | 7011 | 0 | 0 | 6474 | |
| SQA007824 | VP4/2 | 538 | 972 | 0 | 0 | 435 | |
| SQA007825 | genome | 1 | 7023 | 1 | 1 | 7023 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA030434 | protease 3C | 1515 | 1697 | 0 | 0 | 183 | |
| SPA030435 | 3D | 1698 | 2153 | 0 | 0 | 456 | |
| SPA030436 | 3B (VPg) | 1494 | 1514 | 0 | 0 | 21 | |
| SPA030437 | 3A (P3-A) | 1417 | 1493 | 0 | 0 | 77 | |
| SPA030438 | 2C (P2-C) | 1095 | 1416 | 0 | 0 | 322 | |
| SPA030439 | 2B (P2-B) | 1000 | 1094 | 0 | 0 | 95 | |
| SPA030440 | 2A (P2-A) | 858 | 999 | 0 | 0 | 142 | |
| SPA030441 | 1D (VP1) | 571 | 857 | 0 | 0 | 287 | |
| SPA030442 | 1C (VP3) | 330 | 570 | 0 | 0 | 241 | |
| SPA030443 | 1B (VP2) | 70 | 329 | 0 | 0 | 260 | |
| SPA030444 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA030445 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA030446 | CDS | 1 | 2157 | 0 | 0 | 2157 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |