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Whole blood gene expression profiles to assess pathogenesis and disease severity in infants with respiratory syncytial virus infection. |
PLoS Med |
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24475887
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dsRNA-induced changes in gene expression profiles of primary nasal and bronchial epithelial cells from patients with asthma, rhinitis and controls. |
Respir Res |
2014 |
Wagener AH;Zwinderman AH;Luiten S;Fokkens WJ;Bel EH;Sterk PJ;van Drunen CM |
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24684577
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Distinct regulation of tonsillar immune response in virus infection. |
Allergy |
2014 |
Jartti T;Palomares O;Waris M;Tastan O;Nieminen R;Puhakka T;Ruckert B;Aab A;Vuorinen T;Allander T;Vahlberg T;Ruuskanen O;Akdis M;Akdis CA |
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24784476
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MicroRNAs and the immune response to respiratory virus infections. |
Expert Rev Clin Immunol |
2014 |
Globinska A;Pawelczyk M;Kowalski ML |
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25847975
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CCL7 and IRF-7 Mediate Hallmark Inflammatory and IFN Responses following Rhinovirus 1B Infection. |
J Immunol |
2015 |
Girkin J;Hatchwell L;Foster P;Johnston SL;Bartlett N;Collison A;Mattes J |
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25874939
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Host genetic variation influences gene expression response to rhinovirus infection. |
PLoS Genet |
2015 |
Caliskan M;Baker SW;Gilad Y;Ober C |
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26070066
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Host Transcriptional Response to Influenza and Other Acute Respiratory Viral Infections--A Prospective Cohort Study. |
PLoS Pathog |
2015 |
Zhai Y;Franco LM;Atmar RL;Quarles JM;Arden N;Bucasas KL;Wells JM;Nino D;Wang X;Zapata GE;Shaw CA;Belmont JW;Couch RB |
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Gene Expression Profiles Link Respiratory Viral Infection, Platelet Response to Aspirin, and Acute Myocardial Infarction. |
PLoS One |
2015 |
Rose JJ;Voora D;Cyr DD;Lucas JE;Zaas AK;Woods CW;Newby LK;Kraus WE;Ginsburg GS |
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27833115
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Transcriptome assists prognosis of disease severity in respiratory syncytial virus infected infants. |
Sci Rep |
2016 |
Jong VL;Ahout IM;van den Ham HJ;Jans J;Zaaraoui-Boutahar F;Zomer A;Simonetti E;Bijl MA;Brand HK;van IJcken WF;de Jonge MI;Fraaij PL;de Groot R;Osterhaus AD;Eijkemans MJ;Ferwerda G;Andeweg AC |
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Transcriptome profiling of influenza A virus-infected lung epithelial (A549) cells with lariciresinol-4-beta-D-glucopyranoside treatment. |
PLoS One |
2017 |
Zhou B;Li J;Liang X;Yang Z;Jiang Z |
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29016970
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A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations. |
J Am Med Inform Assoc |
2017 |
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29486764
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Impaired type I interferon regulation in the blood transcriptome of recurrent asthma exacerbations. |
BMC Med Genomics |
2018 |
Gomez JL;Diaz MP;Nino G;Britto CJ |
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29521598
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Rhinovirus infection induces distinct transcriptome profiles in polarized human macrophages. |
Physiol Genomics |
2018 |
Rajput C;Walsh MP;Eder BN;Metitiri EE;Popova AP;Hershenson MB |
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29729188
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Atopic asthma after rhinovirus-induced wheezing is associated with DNA methylation change in the SMAD3 gene promoter. |
Allergy |
2018 |
Lund RJ;Osmala M;Malonzo M;Lukkarinen M;Leino A;Salmi J;Vuorikoski S;Turunen R;Vuorinen T;Akdis C;Lahdesmaki H;Lahesmaa R;Jartti T |
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30339221
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Host Gene Expression in Nose and Blood for the Diagnosis of Viral Respiratory Infection. |
J Infect Dis |
2019 |
Yu J;Peterson DR;Baran AM;Bhattacharya S;Wylie TN;Falsey AR;Mariani TJ;Storch GA |
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30342586
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Molecular Endotypes Contribute to the Heterogeneity of Asthma. |
Immunol Allergy Clin North Am |
2018 |
Gelfand EW;Schedel M |
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30745463
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Upper Airway Cell Transcriptomics Identify a Major New Immunological Phenotype with Strong Clinical Correlates in Young Children with Acute Wheezing. |
J Immunol |
2019 |
Khoo SK;Read J;Franks K;Zhang G;Bizzintino J;Coleman L;McCrae C;Oberg L;Troy NM;Prastanti F;Everard J;Oo S;Borland ML;Maciewicz RA;Le Souef PN;Laing IA;Bosco A |
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30962590
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Transcriptome networks identify mechanisms of viral and nonviral asthma exacerbations in children. |
Nat Immunol |
2019 |
Altman MC;Gill MA;Whalen E;Babineau DC;Shao B;Liu AH;Jepson B;Gruchalla RS;O'Connor GT;Pongracic JA;Kercsmar CM;Khurana Hershey GK;Zoratti EM;Johnson CC;Teach SJ;Kattan M;Bacharier LB;Beigelman A;Sigelman SM;Presnell S;Gern JE;Gergen PJ;Wheatley LM;Togias A;Busse WW;Jackson DJ |
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31067687
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Transcriptomic Analysis Reveals Priming of The Host Antiviral Interferon Signaling Pathway by Bronchobini((R)) Resulting in Balanced Immune Response to Rhinovirus Infection in Mouse Lung Tissue Slices. |
Int J Mol Sci |
2019 |
Reamon-Buettner SM;Niehof M;Hirth N;Danov O;Obernolte H;Braun A;Warnecke J;Sewald K;Wronski S |
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31231515
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A curated transcriptome dataset collection to investigate the blood transcriptional response to viral respiratory tract infection and vaccination. |
F1000Res |
2019 |
Bougarn S;Boughorbel S;Chaussabel D;Marr N |
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32155831
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A Meta-Analysis of Multiple Whole Blood Gene Expression Data Unveils a Diagnostic Host-Response Transcript Signature for Respiratory Syncytial Virus. |
Int J Mol Sci |
2020 |
Barral-Arca R;Gomez-Carballa A;Cebey-Lopez M;Bello X;Martinon-Torres F;Salas A |
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32765492
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Rhinovirus Infection Drives Complex Host Airway Molecular Responses in Children With Cystic Fibrosis. |
Front Immunol |
2020 |
Ling KM;Garratt LW;Gill EE;Lee AHY;Agudelo-Romero P;Sutanto EN;Iosifidis T;Rosenow T;Turvey SE;Lassmann T;Hancock REW;Kicic A;Stick SM |
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33197460
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Integrated-omics endotyping of infants with rhinovirus bronchiolitis and risk of childhood asthma. |
J Allergy Clin Immunol |
2021 |
Raita Y;Camargo CA Jr;Bochkov YA;Celedon JC;Gern JE;Mansbach JM;Rhee EP;Freishtat RJ;Hasegawa K |
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33432184
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A novel ACE2 isoform is expressed in human respiratory epithelia and is upregulated in response to interferons and RNA respiratory virus infection. |
Nat Genet |
2021 |
Blume C;Jackson CL;Spalluto CM;Legebeke J;Nazlamova L;Conforti F;Perotin JM;Frank M;Butler J;Crispin M;Coles J;Thompson J;Ridley RA;Dean LSN;Loxham M;Reikine S;Azim A;Tariq K;Johnston DA;Skipp PJ;Djukanovic R;Baralle D;McCormick CJ;Davies DE;Lucas JS;Wheway G;Mennella V |
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33712279
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Cockroach-induced IL9, IL13, and IL31 expression and the development of allergic asthma in urban children. |
J Allergy Clin Immunol |
2021 |
LeBeau P;Lockhart A;Togias A;Sandel MT;Gereige JD;Bacharier L;Lovinsky-Desir S;Wood RA;James R;Busse WW;Gern JE;Altman MC |
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34127671
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Integrated omics endotyping of infants with respiratory syncytial virus bronchiolitis and risk of childhood asthma. |
Nat Commun |
2021 |
Raita Y;Perez-Losada M;Freishtat RJ;Harmon B;Mansbach JM;Piedra PA;Zhu Z;Camargo CA;Hasegawa K |
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34160242
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Rhinovirus Reduces the Severity of Subsequent Respiratory Viral Infections by Interferon-Dependent and -Independent Mechanisms. |
mSphere |
2021 |
Van Leuven JT;Gonzalez AJ;Ijezie EC;Wixom AQ;Clary JL;Naranjo MN;Ridenhour BJ;Miller CR;Miura TA |
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34322716
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The role of CDHR3 in susceptibility to otitis media. |
J Mol Med (Berl) |
2021 |
Hirsch SD;Elling CL;Bootpetch TC;Scholes MA;Hafren L;Streubel SO;Pine HS;Wine TM;Szeremeta W;Prager JD;Einarsdottir E;Yousaf A;Baschal EE;Rehman S;Bamshad MJ;Nickerson DA;Riazuddin S;Leal SM;Ahmed ZM;Yoon PJ;Kere J;Chan KH;Mattila PS;Friedman NR;Chonmaitree T;Frank DN;Ryan AF;Santos-Cortez RLP |
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34376762
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Comparative transcriptome analyses reveal genes associated with SARS-CoV-2 infection of human lung epithelial cells. |
Sci Rep |
2021 |
Chandrashekar DS;Athar M;Manne U;Varambally S |
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34433834
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Early prognosis of respiratory virus shedding in humans. |
Sci Rep |
2021 |
Aminian M;Ghosh T;Peterson A;Rasmussen AL;Stiverson S;Sharma K;Kirby M |
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34777354
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The Host Response to Viral Infections Reveals Common and Virus-Specific Signatures in the Peripheral Blood. |
Front Immunol |
2021 |
Tsalik EL;Fiorino C;Aqeel A;Liu Y;Henao R;Ko ER;Burke TW;Reller ME;Bodinayake CK;Nagahawatte A;Arachchi WK;Devasiri V;Kurukulasooriya R;McClain MT;Woods CW;Ginsburg GS;Tillekeratne LG;Schughart K |
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34782458
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Maternal cannabis use is associated with suppression of immune gene networks in placenta and increased anxiety phenotypes in offspring. |
Proc Natl Acad Sci U S A |
2021 |
Rompala G;Nomura Y;Hurd YL |
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35149044
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Seasonal airway microbiome and transcriptome interactions promote childhood asthma exacerbations. |
J Allergy Clin Immunol |
2022 |
McCauley KE;Flynn K;Calatroni A;DiMassa V;LaMere B;Fadrosh DW;Lynch KV;Gill MA;Pongracic JA;Khurana Hershey GK;Kercsmar CM;Liu AH;Johnson CC;Kim H;Kattan M;O'Connor GT;Bacharier LB;Teach SJ;Gergen PJ;Wheatley LM;Togias A;LeBeau P;Presnell S;Boushey HA;Busse WW;Gern JE;Jackson DJ;Altman MC;Lynch SV |
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35274302
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Transcriptomics of rhinovirus persistence reveals sustained expression of RIG-I and interferon-stimulated genes in nasal epithelial cells in vitro. |
Allergy |
2022 |
Ong HH;Andiappan AK;Duan K;Lum J;Liu J;Tan KS;Howland S;Lee B;Ong YK;Thong M;Chow VT;Wang DY |
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35504488
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Mapping molecular gene signatures mediated by SARS-COV-2 and large-scale and genome-wide transcriptomics comparative analysis among respiratory viruses of medical importance. |
Mol Cell Probes |
2022 |
Smith T;Rohaim MA;Munir M |
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36528702
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Pathway expression analysis. |
Sci Rep |
2022 |
Mankovich N;Kehoe E;Peterson A;Kirby M |
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