PMID Title Journal Publication Year Author View in RVdb
17175538 Rapid DNA mapping by fluorescent single molecule detection. Nucleic Acids Res 2007 Xiao M;Phong A;Ha C;Chan TF;Cai D;Leung L;Wan E;Kistler AL;DeRisi JL;Selvin PR;Kwok PY View More
18382652 Distinguishing molecular features and clinical characteristics of a putative new rhinovirus species, human rhinovirus C (HRV C). PLoS One 2008 McErlean P;Shackelton LA;Andrews E;Webster DR;Lambert SB;Nissen MD;Sloots TP;Mackay IM View More
22355331 Characterization of the viral microbiome in patients with severe lower respiratory tract infections, using metagenomic sequencing. PLoS One 2012 Lysholm F;Wetterbom A;Lindau C;Darban H;Bjerkner A;Fahlander K;Lindberg AM;Persson B;Allander T;Andersson B View More
22424236 Personal omics profiling reveals dynamic molecular and medical phenotypes. Cell 2012 Chen R;Mias GI;Li-Pook-Than J;Jiang L;Lam HY;Chen R;Miriami E;Karczewski KJ;Hariharan M;Dewey FE;Cheng Y;Clark MJ;Im H;Habegger L;Balasubramanian S;O'Huallachain M;Dudley JT;Hillenmeyer S;Haraksingh R;Sharon D;Euskirchen G;Lacroute P;Bettinger K;Boyle AP;Kasowski M;Grubert F;Seki S;Garcia M;Whirl-Carrillo M;Gallardo M;Blasco MA;Greenberg PL;Snyder P;Klein TE;Altman RB;Butte AJ;Ashley EA;Gerstein M;Nadeau KC;Tang H;Snyder M View More
23236501 Genetic variability among complete human respiratory syncytial virus subgroup A genomes: bridging molecular evolutionary dynamics and epidemiology. PLoS One 2012 Tan L;Lemey P;Houspie L;Viveen MC;Jansen NJ;van Loon AM;Wiertz E;van Bleek GM;Martin DP;Coenjaerts FE View More
26231254 Unbiased metagenomic sequencing complements specific routine diagnostic methods and increases chances to detect rare viral strains. Diagn Microbiol Infect Dis 2015 Lewandowska DW;Zagordi O;Zbinden A;Schuurmans MM;Schreiber P;Geissberger FD;Huder JB;Boni J;Benden C;Mueller NJ;Trkola A;Huber M View More
26818672 Unbiased Detection of Respiratory Viruses by Use of RNA Sequencing-Based Metagenomics: a Systematic Comparison to a Commercial PCR Panel. J Clin Microbiol 2016 Graf EH;Simmon KE;Tardif KD;Hymas W;Flygare S;Eilbeck K;Yandell M;Schlaberg R View More
26997589 Functional Genomic Strategies for Elucidating Human-Virus Interactions: Will CRISPR Knockout RNAi and Haploid Cells? Adv Virus Res 2016 Perreira JM;Meraner P;Brass AL View More
27352877 Metagenomics Study of Viral Pathogens in Undiagnosed Respiratory Specimens and Identification of Human Enteroviruses at a Thailand Hospital. Am J Trop Med Hyg 2016 Zhou Y;Fernandez S;Yoon IK;Simasathien S;Watanaveeradej V;Yang Y;Marte-Salcedo OA;Shuck-Lee DJ;Thomas SJ;Hang J;Jarman RG View More
27457695 Ayurgenomics for stratified medicine: TRISUTRA consortium initiative across ethnically and geographically diverse Indian populations. J Ethnopharmacol 2017 Prasher B;Varma B;Kumar A;Khuntia BK;Pandey R;Narang A;Tiwari P;Kutum R;Guin D;Kukreti R;Dash D;Mukerji M View More
27643599 Airway Secretory microRNAome Changes during Rhinovirus Infection in Early Childhood. PLoS One 2016 Gutierrez MJ;Gomez JL;Perez GF;Pancham K;Val S;Pillai DK;Giri M;Ferrante S;Freishtat R;Rose MC;Preciado D;Nino G View More
27871304 Respiratory viral infections and host responses; insights from genomics. Respir Res 2016 Troy NM;Bosco A View More
27921234 Simultaneous virus identification and characterization of severe unexplained pneumonia cases using a metagenomics sequencing technique. Sci China Life Sci 2017 Zou X;Tang G;Zhao X;Huang Y;Chen T;Lei M;Chen W;Yang L;Zhu W;Zhuang L;Yang J;Feng Z;Wang D;Wang D;Shu Y View More
28128353 Genotyping of human rhinovirus in adult patients with acute respiratory infections identified predominant infections of genotype A21. Sci Rep 2017 Ren L;Yang D;Ren X;Li M;Mu X;Wang Q;Cao J;Hu K;Yan C;Fan H;Li X;Chen Y;Wang R;An F;An S;Luo M;Wang Y;Xiao Y;Xiang Z;Xiao Y;Li L;Huang F;Jin Q;Gao Z;Wang J View More
28327377 Community-acquired rhinovirus infection is associated with changes in the airway microbiome. J Allergy Clin Immunol 2017 Kloepfer KM;Sarsani VK;Poroyko V;Lee WM;Pappas TE;Kang T;Grindle KA;Bochkov YA;Janga SC;Lemanske RF Jr;Gern JE View More
28368491 Viral Pathogen Detection by Metagenomics and Pan-Viral Group Polymerase Chain Reaction in Children With Pneumonia Lacking Identifiable Etiology. J Infect Dis 2017 Schlaberg R;Queen K;Simmon K;Tardif K;Stockmann C;Flygare S;Kennedy B;Voelkerding K;Bramley A;Zhang J;Eilbeck K;Yandell M;Jain S;Pavia AT;Tong S;Ampofo K View More
28379561 Rule-Out Outbreak: 24-Hour Metagenomic Next-Generation Sequencing for Characterizing Respiratory Virus Source for Infection Prevention. J Pediatric Infect Dis Soc 2017 Greninger AL;Waghmare A;Adler A;Qin X;Crowley JL;Englund JA;Kuypers JM;Jerome KR;Zerr DM View More
28424887 A metagenomics study for the identification of respiratory viruses in mixed clinical specimens: an application of the iterative mapping approach. Arch Virol 2017 Gong YN;Yang SL;Chen GW;Chen YW;Huang YC;Ning HC;Tsao KC View More
28542207 Metagenomic sequencing complements routine diagnostics in identifying viral pathogens in lung transplant recipients with unknown etiology of respiratory infection. PLoS One 2017 Lewandowska DW;Schreiber PW;Schuurmans MM;Ruehe B;Zagordi O;Bayard C;Greiner M;Geissberger FD;Capaul R;Zbinden A;Boni J;Benden C;Mueller NJ;Trkola A;Huber M View More
28569582 Metagenomic Analysis Identified Human Rhinovirus B91 Infection in an Adult Suffering from Severe Pneumonia. Am J Respir Crit Care Med 2017 Yan F;Xiao Y;Li M;Zhang H;Zhang R;Zhou H;Shen H;Wang J;Li W;Ren L View More
28953874 A reversible haploid mouse embryonic stem cell biobank resource for functional genomics. Nature 2017 Elling U;Wimmer RA;Leibbrandt A;Burkard T;Michlits G;Leopoldi A;Micheler T;Abdeen D;Zhuk S;Aspalter IM;Handl C;Liebergesell J;Hubmann M;Husa AM;Kinzer M;Schuller N;Wetzel E;van de Loo N;Martinez JAZ;Estoppey D;Riedl R;Yang F;Fu B;Dechat T;Ivics Z;Agu CA;Bell O;Blaas D;Gerhardt H;Hoepfner D;Stark A;Penninger JM View More
29320737 Genomic Circuitry Underlying Immunological Response to Pediatric Acute Respiratory Infection. Cell Rep 2018 Henrickson SE;Manne S;Dolfi DV;Mansfield KD;Parkhouse K;Mistry RD;Alpern ER;Hensley SE;Sullivan KE;Coffin SE;Wherry EJ View More
30406048 Limited Correlation of Shotgun Metagenomics Following Host Depletion and Routine Diagnostics for Viruses and Bacteria in Low Concentrated Surrogate and Clinical Samples. Front Cell Infect Microbiol 2018 Oechslin CP;Lenz N;Liechti N;Ryter S;Agyeman P;Bruggmann R;Leib SL;Beuret CM View More
30420263 Changes in the composition of the upper respiratory tract microbial community in granulomatosis with polyangiitis. J Autoimmun 2019 Lamprecht P;Fischer N;Huang J;Burkhardt L;Lutgehetmann M;Arndt F;Rolfs I;Kerstein A;Iking-Konert C;Laudien M View More
30674273 VAPiD: a lightweight cross-platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBank. BMC Bioinformatics 2019 Shean RC;Makhsous N;Stoddard GD;Lin MJ;Greninger AL View More
31091517 Vagal contributions to fetal heart rate variability: an omics approach. Physiol Meas 2019 Herry CL;Burns P;Desrochers A;Fecteau G;Durosier LD;Cao M;Seely AJE;Frasch MG View More
31189707 Effect of Geographic Isolation on the Nasal Virome of Indigenous Children. J Virol 2019 Altan E;Dib JC;Gulloso AR;Escribano Juandigua D;Deng X;Bruhn R;Hildebrand K;Freiden P;Yamamoto J;Schultz-Cherry S;Delwart E View More
31217274 Viruses in Vietnamese Patients Presenting with Community-Acquired Sepsis of Unknown Cause. J Clin Microbiol 2019 Anh NT;Hong NTT;Nhu LNT;Thanh TT;Lau CY;Limmathurotsakul D;Deng X;Rahman M;Chau NVV;van Doorn HR;Thwaites G;Delwart E;Tan LV View More
31376404 Cadherin-related family member 3 (CDHR3) drives differentiation of ciliated bronchial epithelial cells and facilitates rhinovirus C infection, although with a little help. J Allergy Clin Immunol 2019 Lutter R;Ravanetti L View More
31401308 The high genetic similarity between rhinoviruses and enteroviruses remains as a pitfall for molecular diagnostic tools: A three-year overview. Infect Genet Evol 2019 Andres C;Pinana M;Vila J;Esperalba J;Trejo-Zahinos J;Codina MG;Martin MC;Fuentes F;Rubio S;Pumarola T;Anton A View More
31482072 Evolutionary and Structural Overview of Human Picornavirus Capsid Antibody Evasion. Front Cell Infect Microbiol 2019 Cifuente JO;Moratorio G View More
31501513 Metagenomic analysis using next-generation sequencing of pathogens in bronchoalveolar lavage fluid from pediatric patients with respiratory failure. Sci Rep 2019 Takeuchi S;Kawada JI;Horiba K;Okuno Y;Okumura T;Suzuki T;Torii Y;Kawabe S;Wada S;Ikeyama T;Ito Y View More
32379863 Metagenomic Analysis Reveals Clinical SARS-CoV-2 Infection and Bacterial or Viral Superinfection and Colonization. Clin Chem 2020 Peddu V;Shean RC;Xie H;Shrestha L;Perchetti GA;Minot SS;Roychoudhury P;Huang ML;Nalla A;Reddy SB;Phung Q;Reinhardt A;Jerome KR;Greninger AL View More
32482165 Freshwater viral metagenome reveals novel and functional phage-borne antibiotic resistance genes. Microbiome 2020 Moon K;Jeon JH;Kang I;Park KS;Lee K;Cha CJ;Lee SH;Cho JC View More
32872469 The Virome of Acute Respiratory Diseases in Individuals at Risk of Zoonotic Infections. Viruses 2020 Thi Kha Tu N;Thi Thu Hong N;Thi Han Ny N;My Phuc T;Thi Thanh Tam P;Doorn HRV;Dang Trung Nghia H;Thao Huong D;An Han D;Thi Thu Ha L;Deng X;Thwaites G;Delwart E;Virtala AK;Vapalahti O;Baker S;Van Tan L View More
33417831 Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma. Cancer Cell 2021 Huang C;Chen L;Savage SR;Eguez RV;Dou Y;Li Y;da Veiga Leprevost F;Jaehnig EJ;Lei JT;Wen B;Schnaubelt M;Krug K;Song X;Cieslik M;Chang HY;Wyczalkowski MA;Li K;Colaprico A;Li QK;Clark DJ;Hu Y;Cao L;Pan J;Wang Y;Cho KC;Shi Z;Liao Y;Jiang W;Anurag M;Ji J;Yoo S;Zhou DC;Liang WW;Wendl M;Vats P;Carr SA;Mani DR;Zhang Z;Qian J;Chen XS;Pico AR;Wang P;Chinnaiyan AM;Ketchum KA;Kinsinger CR;Robles AI;An E;Hiltke T;Mesri M;Thiagarajan M;Weaver AM;Sikora AG;Lubinski J;Wierzbicka M;Wiznerowicz M;Satpathy S;Gillette MA;Miles G;Ellis MJ;Omenn GS;Rodriguez H;Boja ES;Dhanasekaran SM;Ding L;Nesvizhskii AI;El-Naggar AK;Chan DW;Zhang H;Zhang B View More
33590936 Genetic and epigenetic factors associated with increased severity of Covid-19. Cell Biol Int 2021 Yildirim Z;Sahin OS;Yazar S;Bozok Cetintas V View More
33929935 Blood virosphere in febrile Tanzanian children. Emerg Microbes Infect 2021 Cordey S;Laubscher F;Hartley MA;Junier T;Keitel K;Docquier M;Guex N;Iseli C;Vieille G;Le Mercier P;Gleizes A;Samaka J;Mlaganile T;Kagoro F;Masimba J;Said Z;Temba H;Elbanna GH;Tapparel C;Zanella MC;Xenarios I;Fellay J;D'Acremont V;Kaiser L View More
34793437 Comparative genomic analysis reveals varying levels of mammalian adaptation to coronavirus infections. PLoS Comput Biol 2021 King SB;Singh M View More
34819600 Nasopharyngeal microbiota in hospitalized children with Bordetella pertussis and Rhinovirus infection. Sci Rep 2021 Tozzi AE;Del Chierico F;Pandolfi E;Reddel S;Gesualdo F;Gardini S;Guarrasi V;Russo L;Croci I;Campagna I;Linardos G;Concato C;Villani A;Putignani L View More
34997042 Identification of missed viruses by metagenomic sequencing of clinical respiratory samples from Kenya. Sci Rep 2022 Phan MVT;Agoti CN;Munywoki PK;Otieno GP;Ngama M;Kellam P;Cotten M;Nokes DJ View More
35176118 Total infectome characterization of respiratory infections in pre-COVID-19 Wuhan, China. PLoS Pathog 2022 Shi M;Zhao S;Yu B;Wu WC;Hu Y;Tian JH;Yin W;Ni F;Hu HL;Geng S;Tan L;Peng Y;Song ZG;Wang W;Chen YM;Holmes EC;Zhang YZ View More
35486523 Diagnosis and analysis of unexplained cases of childhood encephalitis in Australia using metatranscriptomic sequencing. J Gen Virol 2022 Li CX;Burrell R;Dale RC;Kesson A;Blyth CC;Clark JE;Crawford N;Jones CA;Britton PN;Holmes EC View More
35544065 Lower respiratory tract infections in children requiring mechanical ventilation: a multicentre prospective surveillance study incorporating airway metagenomics. Lancet Microbe 2022 Tsitsiklis A;Osborne CM;Kamm J;Williamson K;Kalantar K;Dudas G;Caldera S;Lyden A;Tan M;Neff N;Soesanto V;Harris JK;Ambroggio L;Maddux AB;Carpenter TC;Reeder RW;Locandro C;Simoes EAF;Leroue MK;Hall MW;Zuppa AF;Carcillo J;Meert KL;Sapru A;Pollack MM;McQuillen PS;Notterman DA;Dean JM;Zinter MS;Wagner BD;DeRisi JL;Mourani PM;Langelier CR View More
35695488 Evaluation of Metagenomic and Targeted Next-Generation Sequencing Workflows for Detection of Respiratory Pathogens from Bronchoalveolar Lavage Fluid Specimens. J Clin Microbiol 2022 Gaston DC;Miller HB;Fissel JA;Jacobs E;Gough E;Wu J;Klein EY;Carroll KC;Simner PJ View More
35749582 The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. J Infect Dis 2022 Chow EJ;Casto AM;Roychoudhury P;Han PD;Xie H;Pfau B;Nguyen TV;Sereewit J;Rogers JH;Cox SN;Wolf CR;Rolfes MA;Mosites E;Uyeki TM;Greninger AL;Hughes JP;Shim MM;Sugg N;Duchin JS;Starita LM;Englund JA;Chu HY View More
37265497 HBoV-1: virus structure, genomic features, life cycle, pathogenesis, epidemiology, diagnosis and clinical manifestations. Front Cell Infect Microbiol 2023 Mohammadi M View More