| RVdb StrainID | UNS05552 | GenBank Accession | KY094058.1 |
| Species | RVA | Sequence Length | 7131 nt |
| Serotype | 8 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus sp. isolate 12MYKLU0444 from Malaysia polyprotein gene, complete cds | GenBank Submission Date | 2018-09-30 |
| Strain Name | 12MYKLU0444 | Sampling Date | 2012 |
| Sampling Country | Malaysia | Sampling location | Kuala Lumpur |
| Isolation Source | nasopharyngeal swab | NCBI Taxon ID | 169066 |
| Sequencing Technology | Sanger dideoxy sequencing | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQU012937 | 3'UTR | 7060 | 7096 | 0 | 0 | 37 | |
| SQU012938 | 5'UTR | 1 | 600 | 1 | 0 | 600 | |
| SQU012939 | CDS | 601 | 7098 | 0 | 0 | 6498 | |
| SQU012940 | VP4/2 | 601 | 1035 | 0 | 0 | 435 | |
| SQU012941 | 3D | 5680 | 7059 | 0 | 0 | 1380 | |
| SQU012942 | 2C (P2-C) | 3874 | 4836 | 0 | 0 | 963 | |
| SQU012943 | 1D (VP1) | 2302 | 3153 | 0 | 0 | 852 | |
| SQU012944 | 1B (VP2) | 808 | 1587 | 0 | 0 | 780 | |
| SQU012945 | 1C (VP3) | 1588 | 2301 | 0 | 0 | 714 | |
| SQU012946 | protease 3C | 5131 | 5679 | 0 | 0 | 549 | |
| SQU012947 | 2A (P2-A) | 3154 | 3588 | 0 | 0 | 435 | |
| SQU012948 | 2B (P2-B) | 3589 | 3873 | 0 | 0 | 285 | |
| SQU012949 | 3A (P3-A) | 4837 | 5067 | 0 | 0 | 231 | |
| SQU012950 | 1A (VP4) | 601 | 807 | 0 | 0 | 207 | |
| SQU012951 | 3B (VPg) | 5068 | 5130 | 0 | 0 | 63 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA033779 | CDS | 1 | 2165 | 0 | 0 | 2165 | |
| SPA033853 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA033983 | 3D | 1694 | 2153 | 0 | 0 | 460 | |
| SPA033984 | 2C (P2-C) | 1092 | 1412 | 0 | 0 | 321 | |
| SPA033985 | 1D (VP1) | 568 | 851 | 0 | 0 | 284 | |
| SPA033986 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA033987 | 1C (VP3) | 330 | 567 | 0 | 0 | 238 | |
| SPA033988 | protease 3C | 1511 | 1693 | 0 | 0 | 183 | |
| SPA033989 | 2A (P2-A) | 853 | 996 | 0 | 0 | 144 | |
| SPA033990 | 2B (P2-B) | 997 | 1091 | 0 | 0 | 95 | |
| SPA033991 | 3A (P3-A) | 1413 | 1489 | 0 | 0 | 77 | |
| SPA033992 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA033993 | 3B (VPg) | 1490 | 1510 | 0 | 0 | 21 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 29385423 | Viral Load and Sequence Analysis Reveal the Symptom Severity, Diversity, and Transmission Clusters of Rhinovirus Infections. | 2018 | Clin Infect Dis | View More |