| RVdb StrainID | UNS05551 | GenBank Accession | KY094057.1 |
| Species | RVA | Sequence Length | 7148 nt |
| Serotype | 8 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus sp. isolate 12MYKLU0081 from Malaysia polyprotein gene, complete cds | GenBank Submission Date | 2018-09-30 |
| Strain Name | 12MYKLU0081 | Sampling Date | 2012 |
| Sampling Country | Malaysia | Sampling location | Kuala Lumpur |
| Isolation Source | nasopharyngeal swab | NCBI Taxon ID | 169066 |
| Sequencing Technology | Sanger dideoxy sequencing | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQU012922 | 3'UTR | 7081 | 7117 | 0 | 0 | 37 | |
| SQU012923 | 5'UTR | 13 | 621 | 0 | 0 | 609 | |
| SQU012924 | CDS | 622 | 7119 | 0 | 0 | 6498 | |
| SQU012925 | VP4/2 | 622 | 1056 | 0 | 0 | 435 | |
| SQU012926 | 3D | 5701 | 7080 | 0 | 0 | 1380 | |
| SQU012927 | 2C (P2-C) | 3895 | 4857 | 0 | 0 | 963 | |
| SQU012928 | 1D (VP1) | 2323 | 3174 | 0 | 0 | 852 | |
| SQU012929 | 1B (VP2) | 829 | 1608 | 0 | 0 | 780 | |
| SQU012930 | 1C (VP3) | 1609 | 2322 | 0 | 0 | 714 | |
| SQU012931 | protease 3C | 5152 | 5700 | 0 | 0 | 549 | |
| SQU012932 | 2A (P2-A) | 3175 | 3609 | 0 | 0 | 435 | |
| SQU012933 | 2B (P2-B) | 3610 | 3894 | 0 | 0 | 285 | |
| SQU012934 | 3A (P3-A) | 4858 | 5088 | 0 | 0 | 231 | |
| SQU012935 | 1A (VP4) | 622 | 828 | 0 | 0 | 207 | |
| SQU012936 | 3B (VPg) | 5089 | 5151 | 0 | 0 | 63 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA033780 | CDS | 1 | 2165 | 0 | 0 | 2165 | |
| SPA033854 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA033994 | 3D | 1694 | 2153 | 0 | 0 | 460 | |
| SPA033995 | 2C (P2-C) | 1092 | 1412 | 0 | 0 | 321 | |
| SPA033996 | 1D (VP1) | 568 | 851 | 0 | 0 | 284 | |
| SPA033997 | 1B (VP2) | 70 | 330 | 0 | 0 | 261 | |
| SPA033998 | 1C (VP3) | 330 | 567 | 0 | 0 | 238 | |
| SPA033999 | protease 3C | 1511 | 1693 | 0 | 0 | 183 | |
| SPA034000 | 2A (P2-A) | 853 | 996 | 0 | 0 | 144 | |
| SPA034001 | 2B (P2-B) | 997 | 1091 | 0 | 0 | 95 | |
| SPA034002 | 3A (P3-A) | 1413 | 1489 | 0 | 0 | 77 | |
| SPA034003 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA034004 | 3B (VPg) | 1490 | 1510 | 0 | 0 | 21 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 29385423 | Viral Load and Sequence Analysis Reveal the Symptom Severity, Diversity, and Transmission Clusters of Rhinovirus Infections. | 2018 | Clin Infect Dis | View More |