| RVdb StrainID | UNS05549 | GenBank Accession | KY094055.1 |
| Species | RVA | Sequence Length | 7138 nt |
| Serotype | 8 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus sp. isolate 12MYKLU0278 from Malaysia polyprotein gene, complete cds | GenBank Submission Date | 2018-09-30 |
| Strain Name | 12MYKLU0278 | Sampling Date | 2012 |
| Sampling Country | Malaysia | Sampling location | Kuala Lumpur |
| Isolation Source | nasopharyngeal swab | NCBI Taxon ID | 169066 |
| Sequencing Technology | Sanger dideoxy sequencing | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQU012892 | 3'UTR | 7076 | 7112 | 0 | 0 | 37 | |
| SQU012893 | 5'UTR | 8 | 616 | 0 | 0 | 609 | |
| SQU012894 | CDS | 617 | 7114 | 0 | 0 | 6498 | |
| SQU012895 | VP4/2 | 617 | 1051 | 0 | 0 | 435 | |
| SQU012896 | 3D | 5696 | 7075 | 0 | 0 | 1380 | |
| SQU012897 | 2C (P2-C) | 3890 | 4852 | 0 | 0 | 963 | |
| SQU012898 | 1D (VP1) | 2318 | 3169 | 0 | 0 | 852 | |
| SQU012899 | 1B (VP2) | 824 | 1603 | 0 | 0 | 780 | |
| SQU012900 | 1C (VP3) | 1604 | 2317 | 0 | 0 | 714 | |
| SQU012901 | protease 3C | 5147 | 5695 | 0 | 0 | 549 | |
| SQU012902 | 2A (P2-A) | 3170 | 3604 | 0 | 0 | 435 | |
| SQU012903 | 2B (P2-B) | 3605 | 3889 | 0 | 0 | 285 | |
| SQU012904 | 3A (P3-A) | 4853 | 5083 | 0 | 0 | 231 | |
| SQU012905 | 1A (VP4) | 617 | 823 | 0 | 0 | 207 | |
| SQU012906 | 3B (VPg) | 5084 | 5146 | 0 | 0 | 63 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA033782 | CDS | 1 | 2165 | 0 | 0 | 2165 | |
| SPA033856 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA034016 | 3D | 1694 | 2153 | 0 | 0 | 460 | |
| SPA034017 | 2C (P2-C) | 1092 | 1412 | 0 | 0 | 321 | |
| SPA034018 | 1D (VP1) | 568 | 851 | 0 | 0 | 284 | |
| SPA034019 | 1B (VP2) | 70 | 326 | 0 | 0 | 257 | |
| SPA034020 | 1C (VP3) | 330 | 567 | 0 | 0 | 238 | |
| SPA034021 | protease 3C | 1511 | 1693 | 0 | 0 | 183 | |
| SPA034022 | 2A (P2-A) | 853 | 996 | 0 | 0 | 144 | |
| SPA034023 | 2B (P2-B) | 997 | 1091 | 0 | 0 | 95 | |
| SPA034024 | 3A (P3-A) | 1413 | 1489 | 0 | 0 | 77 | |
| SPA034025 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA034026 | 3B (VPg) | 1490 | 1510 | 0 | 0 | 21 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 29385423 | Viral Load and Sequence Analysis Reveal the Symptom Severity, Diversity, and Transmission Clusters of Rhinovirus Infections. | 2018 | Clin Infect Dis | View More |