| RVdb StrainID | UNS05548 | GenBank Accession | KY094054.1 |
| Species | RVA | Sequence Length | 7124 nt |
| Serotype | 8 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus sp. isolate 12MYKLU0034 from Malaysia polyprotein gene, complete cds | GenBank Submission Date | 2018-09-30 |
| Strain Name | 12MYKLU0034 | Sampling Date | 2012 |
| Sampling Country | Malaysia | Sampling location | Kuala Lumpur |
| Isolation Source | nasopharyngeal swab | NCBI Taxon ID | 169066 |
| Sequencing Technology | Sanger dideoxy sequencing | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQU012877 | 3'UTR | 7059 | 7095 | 0 | 0 | 37 | |
| SQU012878 | 5'UTR | 1 | 599 | 1 | 0 | 599 | |
| SQU012879 | CDS | 600 | 7097 | 0 | 0 | 6498 | |
| SQU012880 | VP4/2 | 600 | 1034 | 0 | 0 | 435 | |
| SQU012881 | 3D | 5679 | 7058 | 0 | 0 | 1380 | |
| SQU012882 | 2C (P2-C) | 3873 | 4835 | 0 | 0 | 963 | |
| SQU012883 | 1D (VP1) | 2301 | 3152 | 0 | 0 | 852 | |
| SQU012884 | 1B (VP2) | 807 | 1586 | 0 | 0 | 780 | |
| SQU012885 | 1C (VP3) | 1587 | 2300 | 0 | 0 | 714 | |
| SQU012886 | protease 3C | 5130 | 5678 | 0 | 0 | 549 | |
| SQU012887 | 2A (P2-A) | 3153 | 3587 | 0 | 0 | 435 | |
| SQU012888 | 2B (P2-B) | 3588 | 3872 | 0 | 0 | 285 | |
| SQU012889 | 3A (P3-A) | 4836 | 5066 | 0 | 0 | 231 | |
| SQU012890 | 1A (VP4) | 600 | 806 | 0 | 0 | 207 | |
| SQU012891 | 3B (VPg) | 5067 | 5129 | 0 | 0 | 63 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA033783 | CDS | 1 | 2165 | 0 | 0 | 2165 | |
| SPA033857 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA034027 | 3D | 1694 | 2153 | 0 | 0 | 460 | |
| SPA034028 | 2C (P2-C) | 1092 | 1412 | 0 | 0 | 321 | |
| SPA034029 | 1D (VP1) | 568 | 851 | 0 | 0 | 284 | |
| SPA034030 | 1B (VP2) | 70 | 326 | 0 | 0 | 257 | |
| SPA034031 | 1C (VP3) | 330 | 567 | 0 | 0 | 238 | |
| SPA034032 | protease 3C | 1511 | 1693 | 0 | 0 | 183 | |
| SPA034033 | 2A (P2-A) | 853 | 996 | 0 | 0 | 144 | |
| SPA034034 | 2B (P2-B) | 997 | 1091 | 0 | 0 | 95 | |
| SPA034035 | 3A (P3-A) | 1413 | 1489 | 0 | 0 | 77 | |
| SPA034036 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA034037 | 3B (VPg) | 1490 | 1510 | 0 | 0 | 21 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 29385423 | Viral Load and Sequence Analysis Reveal the Symptom Severity, Diversity, and Transmission Clusters of Rhinovirus Infections. | 2018 | Clin Infect Dis | View More |