| RVdb StrainID | UNS01154 | GenBank Accession | EU840726.1 |
| Species | RVA | Sequence Length | 6964 nt |
| Serotype | 76 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Human rhinovirus sp. strain CL-135587 polyprotein gene, partial cds | GenBank Submission Date | 2016-07-24 |
| Strain Name | CL-135587 | Sampling Date | from 1999 to 2008 |
| Sampling Country | Switzerland | Sampling location | different regions of Switzerland |
| Isolation Source | BAL | NCBI Taxon ID | 169066 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQU002754 | 5'UTR | 1 | 603 | 1 | 0 | 603 | |
| SQU002755 | CDS | 604 | 6964 | 0 | 1 | 6361 | |
| SQU002756 | VP4/2 | 604 | 1038 | 0 | 0 | 435 | |
| SQU002757 | 3D | 5689 | 6964 | 0 | 1 | 1276 | |
| SQU002758 | 2C (P2-C) | 3880 | 4845 | 0 | 0 | 966 | |
| SQU002759 | 1D (VP1) | 2311 | 3168 | 0 | 0 | 858 | |
| SQU002760 | 1B (VP2) | 811 | 1596 | 0 | 0 | 786 | |
| SQU002761 | 1C (VP3) | 1597 | 2310 | 0 | 0 | 714 | |
| SQU002762 | protease 3C | 5140 | 5688 | 0 | 0 | 549 | |
| SQU002763 | 2A (P2-A) | 3169 | 3594 | 0 | 0 | 426 | |
| SQU002764 | 2B (P2-B) | 3595 | 3879 | 0 | 0 | 285 | |
| SQU002765 | 3A (P3-A) | 4846 | 5076 | 0 | 0 | 231 | |
| SQU002766 | 1A (VP4) | 604 | 810 | 0 | 0 | 207 | |
| SQU002767 | 3B (VPg) | 5077 | 5139 | 0 | 0 | 63 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPA033844 | CDS | 1 | 2120 | 0 | 0 | 2120 | |
| SPA033918 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPA034698 | 3D | 1696 | 2120 | 0 | 1 | 425 | |
| SPA034699 | 2C (P2-C) | 1093 | 1414 | 0 | 0 | 322 | |
| SPA034700 | 1D (VP1) | 570 | 855 | 0 | 0 | 286 | |
| SPA034701 | 1B (VP2) | 70 | 331 | 0 | 0 | 262 | |
| SPA034702 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPA034703 | protease 3C | 1513 | 1695 | 0 | 0 | 183 | |
| SPA034704 | 2A (P2-A) | 856 | 997 | 0 | 0 | 142 | |
| SPA034705 | 2B (P2-B) | 998 | 1092 | 0 | 0 | 95 | |
| SPA034706 | 3A (P3-A) | 1415 | 1491 | 0 | 0 | 77 | |
| SPA034707 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPA034708 | 3B (VPg) | 1492 | 1512 | 0 | 0 | 21 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 19402957 | New respiratory enterovirus and recombinant rhinoviruses among circulating picornaviruses. | 2009 | Emerg Infect Dis | View More |