| RVdb StrainID | CNZ05931 | GenBank Accession | EU840952.2 |
| Species | RVC | Sequence Length | 7108 nt |
| Serotype | 11 Checked by RVdb | Serotype (GenBank) | 11 |
| Definition | Human rhinovirus C11 strain CL-170085, complete genome | GenBank Submission Date | 2022-11-06 |
| Strain Name | CL-170085 | Sampling Date | from 2008-04 to 2008 |
| Sampling Country | Switzerland | Sampling location | different regions of Switzerland |
| Isolation Source | BAL; bronchoalveolar lavage | NCBI Taxon ID | 1240004 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC022051 | 1A (VP4) | 619 | 819 | 0 | 0 | 201 | |
| SQC022052 | 1B (VP2) | 820 | 1611 | 0 | 0 | 792 | |
| SQC022053 | 1C (VP3) | 1612 | 2325 | 0 | 0 | 714 | |
| SQC022054 | 1D (VP1) | 2326 | 3144 | 0 | 0 | 819 | |
| SQC022055 | 2A (P2-A) | 3145 | 3570 | 0 | 0 | 426 | |
| SQC022056 | 2B (P2-B) | 3571 | 3867 | 0 | 0 | 297 | |
| SQC022057 | 2C (P2-C) | 3868 | 4845 | 0 | 0 | 978 | |
| SQC022058 | 3'UTR | 7069 | 7108 | 0 | 0 | 40 | |
| SQC022059 | 3A (P3-A) | 4846 | 5070 | 0 | 0 | 225 | |
| SQC022060 | 3B (VPg) | 5071 | 5136 | 0 | 0 | 66 | |
| SQC022061 | 3D | 5686 | 7065 | 0 | 0 | 1380 | |
| SQC022062 | 5'UTR | 1 | 618 | 0 | 0 | 618 | |
| SQC022063 | CDS | 619 | 7068 | 0 | 0 | 6450 | |
| SQC022064 | protease 3C | 5137 | 5685 | 0 | 0 | 549 | |
| SQC022065 | VP4/2 | 619 | 1053 | 0 | 0 | 435 | |
| SQC022066 | genome | 1 | 7108 | 0 | 0 | 7108 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC000375 | CDS | 1 | 2149 | 0 | 0 | 2149 | |
| SPC000376 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC000377 | 3D | 1690 | 2149 | 0 | 0 | 460 | |
| SPC000378 | 2C (P2-C) | 1084 | 1409 | 0 | 0 | 326 | |
| SPC000379 | 1D (VP1) | 570 | 842 | 0 | 0 | 273 | |
| SPC000380 | 1B (VP2) | 68 | 331 | 0 | 0 | 264 | |
| SPC000381 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPC000382 | protease 3C | 1507 | 1689 | 0 | 0 | 183 | |
| SPC000383 | 2A (P2-A) | 843 | 984 | 0 | 0 | 142 | |
| SPC000384 | 2B (P2-B) | 985 | 1083 | 0 | 0 | 99 | |
| SPC000385 | 3A (P3-A) | 1410 | 1484 | 0 | 0 | 75 | |
| SPC000386 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC000387 | 3B (VPg) | 1485 | 1506 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 19402957 | New respiratory enterovirus and recombinant rhinoviruses among circulating picornaviruses. | 2009 | Emerg Infect Dis | View More |