| RVdb StrainID | CNZ04171 | GenBank Accession | KF958311.1 |
| Species | RVC | Sequence Length | 7115 nt |
| Serotype | 41 Checked by RVdb | Serotype (GenBank) | 41 |
| Definition | Rhinovirus C isolate 2536, complete genome | GenBank Submission Date | 2022-11-03 |
| Strain Name | 2536 | Sampling Date | 2000-02-10 |
| Sampling Country | USA | Sampling location | Madison |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | Sanger dideoxy sequencing | Assembly Method | DNAStar SeqMan Pro v. 9.1 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC021078 | 1A (VP4) | 626 | 826 | 0 | 0 | 201 | |
| SQC021079 | 1B (VP2) | 827 | 1621 | 0 | 0 | 795 | |
| SQC021080 | 1C (VP3) | 1622 | 2326 | 0 | 0 | 705 | |
| SQC021081 | 1D (VP1) | 2327 | 3148 | 0 | 0 | 822 | |
| SQC021082 | 2A (P2-A) | 3149 | 3574 | 0 | 0 | 426 | |
| SQC021083 | 2B (P2-B) | 3575 | 3871 | 0 | 0 | 297 | |
| SQC021084 | 2C (P2-C) | 3872 | 4849 | 0 | 0 | 978 | |
| SQC021085 | 3'UTR | 7073 | 7115 | 0 | 0 | 43 | |
| SQC021086 | 3A (P3-A) | 4850 | 5074 | 0 | 0 | 225 | |
| SQC021087 | 3B (VPg) | 5075 | 5140 | 0 | 0 | 66 | |
| SQC021088 | 3D | 5690 | 7069 | 0 | 0 | 1380 | |
| SQC021089 | 5'UTR | 1 | 625 | 0 | 0 | 625 | |
| SQC021090 | CDS | 626 | 7072 | 0 | 0 | 6447 | |
| SQC021091 | protease 3C | 5141 | 5689 | 0 | 0 | 549 | |
| SQC021092 | VP4/2 | 626 | 1056 | 0 | 0 | 431 | |
| SQC021093 | genome | 1 | 7115 | 0 | 0 | 7115 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC004311 | CDS | 1 | 2148 | 0 | 0 | 2148 | |
| SPC004312 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC004313 | 3D | 1689 | 2148 | 0 | 0 | 460 | |
| SPC004314 | 2C (P2-C) | 1083 | 1408 | 0 | 0 | 326 | |
| SPC004315 | 1D (VP1) | 568 | 841 | 0 | 0 | 274 | |
| SPC004316 | 1B (VP2) | 68 | 332 | 0 | 0 | 265 | |
| SPC004317 | 1C (VP3) | 333 | 567 | 0 | 0 | 235 | |
| SPC004318 | protease 3C | 1506 | 1688 | 0 | 0 | 183 | |
| SPC004319 | 2A (P2-A) | 842 | 983 | 0 | 0 | 142 | |
| SPC004320 | 2B (P2-B) | 984 | 1082 | 0 | 0 | 99 | |
| SPC004321 | 3A (P3-A) | 1409 | 1483 | 0 | 0 | 75 | |
| SPC004322 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC004323 | 3B (VPg) | 1484 | 1505 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24636084 | Effects of rhinovirus species on viral replication and cytokine production. | 2014 | J Allergy Clin Immunol | View More |