RVdb StrainID CNZ03381 GenBank Accession KU695562.1
Species RVC Sequence Length 7089 nt
Serotype 53  Added by RVdb Serotype (GenBank) -N/A-
Definition Rhinovirus C strain UT-I, complete genome GenBank Submission Date 2022-11-03
Strain Name UT-I Sampling Date 2013
Sampling Country USA Sampling location Carlsbad, CA
Isolation Source -N/A- NCBI Taxon ID 463676
Sequencing Technology Illumina Assembly Method Geneious v. 8.1

Download selected NT sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SQC020670 1A (VP4) 626 826 0 0 201
SQC020671 1B (VP2) 827 1612 0 0 786
SQC020672 1C (VP3) 1613 2320 0 0 708
SQC020673 1D (VP1) 2321 3142 0 0 822
SQC020674 2A (P2-A) 3143 3568 0 0 426
SQC020675 2B (P2-B) 3569 3865 0 0 297
SQC020676 2C (P2-C) 3866 4843 0 0 978
SQC020677 3'UTR 7067 0 0 1 23
SQC020678 3A (P3-A) 4844 5068 0 0 225
SQC020679 3B (VPg) 5069 5134 0 0 66
SQC020680 3D 5684 7063 0 0 1380
SQC020681 5'UTR 14 625 0 0 612
SQC020682 CDS 626 7066 0 0 6441
SQC020683 protease 3C 5135 5683 0 0 549
SQC020684 VP4/2 626 1056 0 0 431
SQC020685 genome 1 7089 0 1 7089
Download selected AA sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SPC005995 CDS 1 2146 0 0 2146
SPC005996 VP4/2 1 145 0 0 145
SPC005997 3D 1687 2146 0 0 460
SPC005998 2C (P2-C) 1081 1406 0 0 326
SPC005999 1D (VP1) 566 839 0 0 274
SPC006000 1B (VP2) 68 329 0 0 262
SPC006001 1C (VP3) 330 565 0 0 236
SPC006002 protease 3C 1504 1686 0 0 183
SPC006003 2A (P2-A) 840 981 0 0 142
SPC006004 2B (P2-B) 982 1080 0 0 99
SPC006005 3A (P3-A) 1407 1481 0 0 75
SPC006006 1A (VP4) 1 67 0 0 67
SPC006007 3B (VPg) 1482 1503 0 0 22
PMID Title Publication Year Journal View in RVdb
26818672 Unbiased Detection of Respiratory Viruses by Use of RNA Sequencing-Based Metagenomics: a Systematic Comparison to a Commercial PCR Panel. 2016 J Clin Microbiol View More