| RVdb StrainID | CNZ03381 | GenBank Accession | KU695562.1 |
| Species | RVC | Sequence Length | 7089 nt |
| Serotype | 53 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Rhinovirus C strain UT-I, complete genome | GenBank Submission Date | 2022-11-03 |
| Strain Name | UT-I | Sampling Date | 2013 |
| Sampling Country | USA | Sampling location | Carlsbad, CA |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Geneious v. 8.1 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC020670 | 1A (VP4) | 626 | 826 | 0 | 0 | 201 | |
| SQC020671 | 1B (VP2) | 827 | 1612 | 0 | 0 | 786 | |
| SQC020672 | 1C (VP3) | 1613 | 2320 | 0 | 0 | 708 | |
| SQC020673 | 1D (VP1) | 2321 | 3142 | 0 | 0 | 822 | |
| SQC020674 | 2A (P2-A) | 3143 | 3568 | 0 | 0 | 426 | |
| SQC020675 | 2B (P2-B) | 3569 | 3865 | 0 | 0 | 297 | |
| SQC020676 | 2C (P2-C) | 3866 | 4843 | 0 | 0 | 978 | |
| SQC020677 | 3'UTR | 7067 | 0 | 0 | 1 | 23 | |
| SQC020678 | 3A (P3-A) | 4844 | 5068 | 0 | 0 | 225 | |
| SQC020679 | 3B (VPg) | 5069 | 5134 | 0 | 0 | 66 | |
| SQC020680 | 3D | 5684 | 7063 | 0 | 0 | 1380 | |
| SQC020681 | 5'UTR | 14 | 625 | 0 | 0 | 612 | |
| SQC020682 | CDS | 626 | 7066 | 0 | 0 | 6441 | |
| SQC020683 | protease 3C | 5135 | 5683 | 0 | 0 | 549 | |
| SQC020684 | VP4/2 | 626 | 1056 | 0 | 0 | 431 | |
| SQC020685 | genome | 1 | 7089 | 0 | 1 | 7089 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC005995 | CDS | 1 | 2146 | 0 | 0 | 2146 | |
| SPC005996 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC005997 | 3D | 1687 | 2146 | 0 | 0 | 460 | |
| SPC005998 | 2C (P2-C) | 1081 | 1406 | 0 | 0 | 326 | |
| SPC005999 | 1D (VP1) | 566 | 839 | 0 | 0 | 274 | |
| SPC006000 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC006001 | 1C (VP3) | 330 | 565 | 0 | 0 | 236 | |
| SPC006002 | protease 3C | 1504 | 1686 | 0 | 0 | 183 | |
| SPC006003 | 2A (P2-A) | 840 | 981 | 0 | 0 | 142 | |
| SPC006004 | 2B (P2-B) | 982 | 1080 | 0 | 0 | 99 | |
| SPC006005 | 3A (P3-A) | 1407 | 1481 | 0 | 0 | 75 | |
| SPC006006 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC006007 | 3B (VPg) | 1482 | 1503 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 26818672 | Unbiased Detection of Respiratory Viruses by Use of RNA Sequencing-Based Metagenomics: a Systematic Comparison to a Commercial PCR Panel. | 2016 | J Clin Microbiol | View More |