| RVdb StrainID | CNZ03061 | GenBank Accession | KY348864.1 |
| Species | RVC | Sequence Length | 7102 nt |
| Serotype | 15 Checked by RVdb | Serotype (GenBank) | 15 |
| Definition | Rhinovirus C isolate S07-0909-U polyprotein gene, complete cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | S07-0909-U | Sampling Date | 2009 |
| Sampling Country | Switzerland | Sampling location | -N/A- |
| Isolation Source | nasopharyngeal aspirate | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | IDBA-UD v. 2012 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC020454 | 1A (VP4) | 597 | 797 | 0 | 0 | 201 | |
| SQC020455 | 1B (VP2) | 798 | 1592 | 0 | 0 | 795 | |
| SQC020456 | 1C (VP3) | 1593 | 2306 | 0 | 0 | 714 | |
| SQC020457 | 1D (VP1) | 2307 | 3134 | 0 | 0 | 828 | |
| SQC020458 | 2A (P2-A) | 3135 | 3562 | 0 | 0 | 428 | |
| SQC020459 | 2B (P2-B) | 3563 | 3857 | 0 | 0 | 295 | |
| SQC020460 | 2C (P2-C) | 3858 | 4835 | 0 | 0 | 978 | |
| SQC020461 | 3'UTR | 7059 | 7099 | 0 | 0 | 41 | |
| SQC020462 | 3A (P3-A) | 4836 | 5060 | 0 | 0 | 225 | |
| SQC020463 | 3B (VPg) | 5061 | 5126 | 0 | 0 | 66 | |
| SQC020464 | 3D | 5676 | 7055 | 0 | 0 | 1380 | |
| SQC020465 | 5'UTR | 0 | 596 | 1 | 0 | 596 | |
| SQC020466 | CDS | 597 | 7058 | 0 | 0 | 6462 | |
| SQC020467 | protease 3C | 5127 | 5675 | 0 | 0 | 549 | |
| SQC020468 | VP4/2 | 597 | 1027 | 0 | 0 | 431 | |
| SQC020469 | genome | 1 | 7102 | 1 | 0 | 7102 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC006457 | CDS | 1 | 2153 | 0 | 0 | 2153 | |
| SPC006458 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC006459 | 3D | 1694 | 2153 | 0 | 0 | 460 | |
| SPC006460 | 2C (P2-C) | 1088 | 1413 | 0 | 0 | 326 | |
| SPC006461 | 1D (VP1) | 568 | 846 | 0 | 0 | 279 | |
| SPC006462 | 1B (VP2) | 68 | 332 | 0 | 0 | 265 | |
| SPC006463 | 1C (VP3) | 333 | 567 | 0 | 0 | 235 | |
| SPC006464 | protease 3C | 1511 | 1693 | 0 | 0 | 183 | |
| SPC006465 | 2A (P2-A) | 847 | 988 | 0 | 0 | 142 | |
| SPC006466 | 2B (P2-B) | 989 | 1087 | 0 | 0 | 99 | |
| SPC006467 | 3A (P3-A) | 1414 | 1488 | 0 | 0 | 75 | |
| SPC006468 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC006469 | 3B (VPg) | 1489 | 1510 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 28797733 | Propagation of respiratory viruses in human airway epithelia reveals persistent virus-specific signatures. | 2018 | J Allergy Clin Immunol | View More |