| RVdb StrainID | CNZ03046 | GenBank Accession | KY624849.1 |
| Species | RVC | Sequence Length | 6972 nt |
| Serotype | 45 Checked by RVdb | Serotype (GenBank) | 45 |
| Definition | Rhinovirus C isolate RV-C45-cpz1-2013 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | RV-C45-cpz1-2013 | Sampling Date | 2013-03-11 |
| Sampling Country | Uganda | Sampling location | Kibale National Park, western Uganda |
| Isolation Source | tracheal swab | NCBI Taxon ID | 463676 |
| Sequencing Technology | Sanger dideoxy sequencing; Illumina | Assembly Method | CLC Genomics Workbench v. 8 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC020421 | 1A (VP4) | 481 | 681 | 0 | 0 | 201 | |
| SQC020422 | 1B (VP2) | 682 | 1473 | 0 | 0 | 792 | |
| SQC020423 | 1C (VP3) | 1474 | 2187 | 0 | 0 | 714 | |
| SQC020424 | 1D (VP1) | 2188 | 3006 | 0 | 0 | 819 | |
| SQC020425 | 2A (P2-A) | 3007 | 3432 | 0 | 0 | 426 | |
| SQC020426 | 2B (P2-B) | 3433 | 3729 | 0 | 0 | 297 | |
| SQC020427 | 2C (P2-C) | 3730 | 4707 | 0 | 0 | 978 | |
| SQC020428 | 3'UTR | 6931 | 0 | 0 | 1 | 42 | |
| SQC020429 | 3A (P3-A) | 4708 | 4932 | 0 | 0 | 225 | |
| SQC020430 | 3B (VPg) | 4933 | 4998 | 0 | 0 | 66 | |
| SQC020431 | 3D | 5548 | 6927 | 0 | 0 | 1380 | |
| SQC020432 | 5'UTR | 0 | 480 | 1 | 0 | 480 | |
| SQC020433 | CDS | 481 | 6930 | 0 | 0 | 6450 | |
| SQC020434 | protease 3C | 4999 | 5547 | 0 | 0 | 549 | |
| SQC020435 | VP4/2 | 481 | 911 | 0 | 0 | 431 | |
| SQC020436 | genome | 1 | 6972 | 1 | 1 | 6972 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC008270 | CDS | 1 | 2149 | 0 | 0 | 2149 | |
| SPC008271 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC008272 | 3D | 1690 | 2149 | 0 | 0 | 460 | |
| SPC008273 | 2C (P2-C) | 1084 | 1409 | 0 | 0 | 326 | |
| SPC008274 | 1D (VP1) | 570 | 842 | 0 | 0 | 273 | |
| SPC008275 | 1B (VP2) | 68 | 331 | 0 | 0 | 264 | |
| SPC008276 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPC008277 | protease 3C | 1507 | 1689 | 0 | 0 | 183 | |
| SPC008278 | 2A (P2-A) | 843 | 984 | 0 | 0 | 142 | |
| SPC008279 | 2B (P2-B) | 985 | 1083 | 0 | 0 | 99 | |
| SPC008280 | 3A (P3-A) | 1410 | 1484 | 0 | 0 | 75 | |
| SPC008281 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC008282 | 3B (VPg) | 1485 | 1506 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 29350142 | Lethal Respiratory Disease Associated with Human Rhinovirus C in Wild Chimpanzees, Uganda, 2013. | 2018 | Emerg Infect Dis | View More |