| RVdb StrainID | CNZ01876 | GenBank Accession | MH685697.1 |
| Species | RVC | Sequence Length | 6761 nt |
| Serotype | 26 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Rhinovirus C isolate E0-233 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | E0-233 | Sampling Date | 2013 |
| Sampling Country | Uganda | Sampling location | Tororo District Hospital |
| Isolation Source | nasopharynx | NCBI Taxon ID | 463676 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC019808 | 1A (VP4) | 546 | 746 | 0 | 0 | 201 | |
| SQC019809 | 1B (VP2) | 747 | 1532 | 0 | 0 | 786 | |
| SQC019810 | 1C (VP3) | 1533 | 2240 | 0 | 0 | 708 | |
| SQC019811 | 1D (VP1) | 2241 | 3062 | 0 | 0 | 822 | |
| SQC019812 | 2A (P2-A) | 3063 | 3488 | 0 | 0 | 426 | |
| SQC019813 | 2B (P2-B) | 3489 | 3785 | 0 | 0 | 297 | |
| SQC019814 | 2C (P2-C) | 3786 | 4760 | 0 | 0 | 975 | |
| SQC019815 | 3A (P3-A) | 4761 | 4985 | 0 | 0 | 225 | |
| SQC019816 | 3B (VPg) | 4986 | 5051 | 0 | 0 | 66 | |
| SQC019817 | 3D | 5601 | 0 | 0 | 1 | 1161 | |
| SQC019818 | 5'UTR | 0 | 545 | 1 | 0 | 545 | |
| SQC019819 | CDS | 546 | 0 | 0 | 1 | 6216 | |
| SQC019820 | protease 3C | 5052 | 5600 | 0 | 0 | 549 | |
| SQC019821 | VP4/2 | 546 | 976 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC008388 | CDS | 1 | 2072 | 0 | 0 | 2072 | |
| SPC008389 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC008390 | 3D | 1686 | 2072 | 0 | 1 | 387 | |
| SPC008391 | 2C (P2-C) | 1081 | 1405 | 0 | 0 | 325 | |
| SPC008392 | 1D (VP1) | 566 | 839 | 0 | 0 | 274 | |
| SPC008393 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC008394 | 1C (VP3) | 330 | 565 | 0 | 0 | 236 | |
| SPC008395 | protease 3C | 1503 | 1685 | 0 | 0 | 183 | |
| SPC008396 | 2A (P2-A) | 840 | 981 | 0 | 0 | 142 | |
| SPC008397 | 2B (P2-B) | 982 | 1080 | 0 | 0 | 99 | |
| SPC008398 | 3A (P3-A) | 1406 | 1480 | 0 | 0 | 75 | |
| SPC008399 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC008400 | 3B (VPg) | 1481 | 1502 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 31220115 | Metagenomic next-generation sequencing of samples from pediatric febrile illness in Tororo, Uganda. | 2019 | PLoS One | View More |