| RVdb StrainID | CNZ01871 | GenBank Accession | MH685703.1 |
| Species | RVC | Sequence Length | 2678 nt |
| Serotype | -N/A- | Serotype (GenBank) | -N/A- |
| Definition | Rhinovirus C isolate E0-239 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | E0-239 | Sampling Date | 2013 |
| Sampling Country | Uganda | Sampling location | Tororo District Hospital |
| Isolation Source | nasopharynx | NCBI Taxon ID | 463676 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC019802 | 2B (P2-B) | 101 | 397 | 0 | 0 | 297 | |
| SQC019803 | 2C (P2-C) | 398 | 1375 | 0 | 0 | 978 | |
| SQC019804 | 3A (P3-A) | 1376 | 1609 | 0 | 0 | 234 | |
| SQC019805 | 3B (VPg) | 1610 | 1675 | 0 | 0 | 66 | |
| SQC019806 | CDS | 0 | 0 | 1 | 1 | 2678 | |
| SQC019807 | protease 3C | 1676 | 2219 | 0 | 0 | 544 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC008421 | CDS | 1 | 892 | 0 | 1 | 892 | |
| SPC008422 | 2C (P2-C) | 133 | 461 | 0 | 0 | 329 | |
| SPC008423 | protease 3C | 559 | 741 | 0 | 0 | 183 | |
| SPC008424 | 2B (P2-B) | 34 | 132 | 0 | 0 | 99 | |
| SPC008425 | 3A (P3-A) | 462 | 536 | 0 | 0 | 75 | |
| SPC008426 | 3B (VPg) | 537 | 558 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 31220115 | Metagenomic next-generation sequencing of samples from pediatric febrile illness in Tororo, Uganda. | 2019 | PLoS One | View More |