| RVdb StrainID | CNZ00061 | GenBank Accession | OL961526.1 |
| Species | RVC | Sequence Length | 7058 nt |
| Serotype | 17 Checked by RVdb | Serotype (GenBank) | 17 |
| Definition | Rhinovirus C17 strain RvC17/USA/2021/F439UE, complete genome | GenBank Submission Date | 2022-11-06 |
| Strain Name | RvC17/USA/2021/F439UE | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1219404 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC018071 | 1A (VP4) | 577 | 777 | 0 | 0 | 201 | |
| SQC018072 | 1B (VP2) | 778 | 1566 | 0 | 0 | 789 | |
| SQC018073 | 1C (VP3) | 1567 | 2280 | 0 | 0 | 714 | |
| SQC018074 | 1D (VP1) | 2281 | 3099 | 0 | 0 | 819 | |
| SQC018075 | 2A (P2-A) | 3100 | 3525 | 0 | 0 | 426 | |
| SQC018076 | 2B (P2-B) | 3526 | 3822 | 0 | 0 | 297 | |
| SQC018077 | 2C (P2-C) | 3823 | 4800 | 0 | 0 | 978 | |
| SQC018078 | 3A (P3-A) | 4801 | 5025 | 0 | 0 | 225 | |
| SQC018079 | 3B (VPg) | 5026 | 5091 | 0 | 0 | 66 | |
| SQC018080 | 3D | 5641 | 7020 | 0 | 0 | 1380 | |
| SQC018081 | 5'UTR | 0 | 576 | 1 | 0 | 576 | |
| SQC018082 | CDS | 577 | 7023 | 0 | 0 | 6447 | |
| SQC018083 | protease 3C | 5092 | 5640 | 0 | 0 | 549 | |
| SQC018084 | VP4/2 | 577 | 1007 | 0 | 0 | 431 | |
| SQC018085 | genome | 1 | 7058 | 1 | 1 | 7058 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC016094 | CDS | 1 | 2148 | 0 | 0 | 2148 | |
| SPC016095 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC016096 | 3D | 1689 | 2148 | 0 | 0 | 460 | |
| SPC016097 | 2C (P2-C) | 1083 | 1408 | 0 | 0 | 326 | |
| SPC016098 | 1D (VP1) | 567 | 841 | 0 | 0 | 275 | |
| SPC016099 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC016100 | 1C (VP3) | 331 | 566 | 0 | 0 | 236 | |
| SPC016101 | protease 3C | 1506 | 1688 | 0 | 0 | 183 | |
| SPC016102 | 2A (P2-A) | 842 | 983 | 0 | 0 | 142 | |
| SPC016103 | 2B (P2-B) | 984 | 1082 | 0 | 0 | 99 | |
| SPC016104 | 3A (P3-A) | 1409 | 1483 | 0 | 0 | 75 | |
| SPC016105 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC016106 | 3B (VPg) | 1484 | 1505 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |