| RVdb StrainID | CNZ00056 | GenBank Accession | OM001344.1 |
| Species | RVC | Sequence Length | 7065 nt |
| Serotype | 11 Checked by RVdb | Serotype (GenBank) | 11 |
| Definition | Rhinovirus C11 strain RvC11/USA/2021/2VT7W9, complete genome | GenBank Submission Date | 2022-11-06 |
| Strain Name | RvC11/USA/2021/2VT7W9 | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1240004 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC018055 | 1A (VP4) | 582 | 782 | 0 | 0 | 201 | |
| SQC018056 | 1B (VP2) | 783 | 1574 | 0 | 0 | 792 | |
| SQC018057 | 1C (VP3) | 1575 | 2288 | 0 | 0 | 714 | |
| SQC018058 | 1D (VP1) | 2289 | 3107 | 0 | 0 | 819 | |
| SQC018059 | 2A (P2-A) | 3108 | 3533 | 0 | 0 | 426 | |
| SQC018060 | 2B (P2-B) | 3534 | 3830 | 0 | 0 | 297 | |
| SQC018061 | 2C (P2-C) | 3831 | 4808 | 0 | 0 | 978 | |
| SQC018062 | 3'UTR | 7032 | 0 | 0 | 1 | 34 | |
| SQC018063 | 3A (P3-A) | 4809 | 5033 | 0 | 0 | 225 | |
| SQC018064 | 3B (VPg) | 5034 | 5099 | 0 | 0 | 66 | |
| SQC018065 | 3D | 5649 | 7028 | 0 | 0 | 1380 | |
| SQC018066 | 5'UTR | 0 | 581 | 1 | 0 | 581 | |
| SQC018067 | CDS | 582 | 7031 | 0 | 0 | 6450 | |
| SQC018068 | protease 3C | 5100 | 5648 | 0 | 0 | 549 | |
| SQC018069 | VP4/2 | 582 | 1016 | 0 | 0 | 435 | |
| SQC018070 | genome | 1 | 7065 | 1 | 1 | 7065 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC015913 | CDS | 1 | 2149 | 0 | 0 | 2149 | |
| SPC015914 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC015915 | 3D | 1690 | 2149 | 0 | 0 | 460 | |
| SPC015916 | 2C (P2-C) | 1084 | 1409 | 0 | 0 | 326 | |
| SPC015917 | 1D (VP1) | 570 | 842 | 0 | 0 | 273 | |
| SPC015918 | 1B (VP2) | 68 | 331 | 0 | 0 | 264 | |
| SPC015919 | 1C (VP3) | 332 | 569 | 0 | 0 | 238 | |
| SPC015920 | protease 3C | 1507 | 1689 | 0 | 0 | 183 | |
| SPC015921 | 2A (P2-A) | 843 | 984 | 0 | 0 | 142 | |
| SPC015922 | 2B (P2-B) | 985 | 1083 | 0 | 0 | 99 | |
| SPC015923 | 3A (P3-A) | 1410 | 1484 | 0 | 0 | 75 | |
| SPC015924 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC015925 | 3B (VPg) | 1485 | 1506 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |