| RVdb StrainID | CNZ00051 | GenBank Accession | OM001412.1 |
| Species | RVC | Sequence Length | 7069 nt |
| Serotype | 44 Checked by RVdb | Serotype (GenBank) | 44 |
| Definition | Rhinovirus C44 strain RvC44/USA/2021/86PLMK, complete genome | GenBank Submission Date | 2022-11-06 |
| Strain Name | RvC44/USA/2021/86PLMK | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 2045079 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC018040 | 1A (VP4) | 581 | 781 | 0 | 0 | 201 | |
| SQC018041 | 1B (VP2) | 782 | 1575 | 0 | 0 | 794 | |
| SQC018042 | 1C (VP3) | 1576 | 2293 | 0 | 0 | 718 | |
| SQC018043 | 1D (VP1) | 2294 | 3125 | 0 | 0 | 832 | |
| SQC018044 | 2A (P2-A) | 3126 | 3550 | 0 | 0 | 425 | |
| SQC018045 | 2B (P2-B) | 3551 | 3847 | 0 | 0 | 297 | |
| SQC018046 | 2C (P2-C) | 3848 | 4825 | 0 | 0 | 978 | |
| SQC018047 | 3A (P3-A) | 4826 | 5050 | 0 | 0 | 225 | |
| SQC018048 | 3B (VPg) | 5051 | 5116 | 0 | 0 | 66 | |
| SQC018049 | 3D | 5666 | 7045 | 0 | 0 | 1380 | |
| SQC018050 | 5'UTR | 0 | 580 | 1 | 0 | 580 | |
| SQC018051 | CDS | 581 | 7048 | 0 | 0 | 6468 | |
| SQC018052 | protease 3C | 5117 | 5665 | 0 | 0 | 549 | |
| SQC018053 | VP4/2 | 581 | 1011 | 0 | 0 | 431 | |
| SQC018054 | genome | 1 | 7069 | 1 | 1 | 7069 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC015978 | CDS | 1 | 2155 | 0 | 0 | 2155 | |
| SPC015979 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC015980 | 3D | 1696 | 2155 | 0 | 0 | 460 | |
| SPC015981 | 2C (P2-C) | 1090 | 1415 | 0 | 0 | 326 | |
| SPC015982 | 1D (VP1) | 570 | 848 | 0 | 0 | 279 | |
| SPC015983 | 1B (VP2) | 68 | 332 | 0 | 0 | 265 | |
| SPC015984 | 1C (VP3) | 333 | 569 | 0 | 0 | 237 | |
| SPC015985 | protease 3C | 1513 | 1695 | 0 | 0 | 183 | |
| SPC015986 | 2A (P2-A) | 849 | 990 | 0 | 0 | 142 | |
| SPC015987 | 2B (P2-B) | 991 | 1089 | 0 | 0 | 99 | |
| SPC015988 | 3A (P3-A) | 1416 | 1490 | 0 | 0 | 75 | |
| SPC015989 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC015990 | 3B (VPg) | 1491 | 1512 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |