| RVdb StrainID | CNZ00046 | GenBank Accession | OM001455.1 |
| Species | RVC | Sequence Length | 7033 nt |
| Serotype | 3 Checked by RVdb | Serotype (GenBank) | 3 |
| Definition | Rhinovirus C3 strain RvC3/USA/2021/U9JKY7, complete genome | GenBank Submission Date | 2022-11-06 |
| Strain Name | RvC3/USA/2021/U9JKY7 | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1219377 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC018024 | 1A (VP4) | 561 | 761 | 0 | 0 | 201 | |
| SQC018025 | 1B (VP2) | 762 | 1550 | 0 | 0 | 789 | |
| SQC018026 | 1C (VP3) | 1551 | 2249 | 0 | 0 | 699 | |
| SQC018027 | 1D (VP1) | 2250 | 3074 | 0 | 0 | 825 | |
| SQC018028 | 2A (P2-A) | 3075 | 3500 | 0 | 0 | 426 | |
| SQC018029 | 2B (P2-B) | 3501 | 3791 | 0 | 0 | 291 | |
| SQC018030 | 2C (P2-C) | 3792 | 4766 | 0 | 0 | 975 | |
| SQC018031 | 3'UTR | 6993 | 0 | 0 | 1 | 41 | |
| SQC018032 | 3A (P3-A) | 4767 | 4994 | 0 | 0 | 228 | |
| SQC018033 | 3B (VPg) | 4995 | 5060 | 0 | 0 | 66 | |
| SQC018034 | 3D | 5610 | 6989 | 0 | 0 | 1380 | |
| SQC018035 | 5'UTR | 0 | 560 | 1 | 0 | 560 | |
| SQC018036 | CDS | 561 | 6992 | 0 | 0 | 6432 | |
| SQC018037 | protease 3C | 5061 | 5609 | 0 | 0 | 549 | |
| SQC018038 | VP4/2 | 561 | 991 | 0 | 0 | 431 | |
| SQC018039 | genome | 1 | 7033 | 1 | 1 | 7033 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC016043 | CDS | 1 | 2143 | 0 | 0 | 2143 | |
| SPC016044 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC016045 | 3D | 1684 | 2143 | 0 | 0 | 460 | |
| SPC016046 | 2C (P2-C) | 1078 | 1402 | 0 | 0 | 325 | |
| SPC016047 | 1D (VP1) | 561 | 838 | 0 | 0 | 278 | |
| SPC016048 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC016049 | 1C (VP3) | 331 | 560 | 0 | 0 | 230 | |
| SPC016050 | protease 3C | 1501 | 1683 | 0 | 0 | 183 | |
| SPC016051 | 2A (P2-A) | 839 | 980 | 0 | 0 | 142 | |
| SPC016052 | 3A (P3-A) | 1403 | 1478 | 0 | 0 | 76 | |
| SPC016053 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC016054 | 3B (VPg) | 1479 | 1500 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |