| RVdb StrainID | CNZ00036 | GenBank Accession | ON311158.1 |
| Species | RVC | Sequence Length | 7013 nt |
| Serotype | 36 Corrected by RVdb | Serotype (GenBank) | 51 |
| Definition | Rhinovirus C51 strain C36_3 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | C36_3 | Sampling Date | 2021-01-18 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 2777131 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC017993 | 1A (VP4) | 536 | 736 | 0 | 0 | 201 | |
| SQC017994 | 1B (VP2) | 737 | 1521 | 0 | 0 | 785 | |
| SQC017995 | 1C (VP3) | 1522 | 2230 | 0 | 0 | 709 | |
| SQC017996 | 1D (VP1) | 2231 | 3046 | 0 | 0 | 816 | |
| SQC017997 | 2A (P2-A) | 3047 | 3472 | 0 | 0 | 426 | |
| SQC017998 | 2B (P2-B) | 3473 | 3769 | 0 | 0 | 297 | |
| SQC017999 | 2C (P2-C) | 3770 | 4747 | 0 | 0 | 978 | |
| SQC018000 | 3'UTR | 6971 | 7013 | 0 | 0 | 43 | |
| SQC018001 | 3A (P3-A) | 4748 | 4972 | 0 | 0 | 225 | |
| SQC018002 | 3B (VPg) | 4973 | 5038 | 0 | 0 | 66 | |
| SQC018003 | 3D | 5588 | 6967 | 0 | 0 | 1380 | |
| SQC018004 | 5'UTR | 0 | 535 | 1 | 0 | 535 | |
| SQC018005 | CDS | 536 | 6970 | 0 | 0 | 6435 | |
| SQC018006 | protease 3C | 5039 | 5587 | 0 | 0 | 549 | |
| SQC018007 | VP4/2 | 536 | 965 | 0 | 0 | 430 | |
| SQC018008 | genome | 1 | 7013 | 1 | 0 | 7013 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC017471 | CDS | 1 | 2144 | 0 | 0 | 2144 | |
| SPC017472 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC017473 | 3D | 1685 | 2144 | 0 | 0 | 460 | |
| SPC017474 | 2C (P2-C) | 1079 | 1404 | 0 | 0 | 326 | |
| SPC017475 | 1D (VP1) | 566 | 837 | 0 | 0 | 272 | |
| SPC017476 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC017477 | 1C (VP3) | 330 | 565 | 0 | 0 | 236 | |
| SPC017478 | protease 3C | 1502 | 1684 | 0 | 0 | 183 | |
| SPC017479 | 2A (P2-A) | 838 | 979 | 0 | 0 | 142 | |
| SPC017480 | 2B (P2-B) | 980 | 1078 | 0 | 0 | 99 | |
| SPC017481 | 3A (P3-A) | 1405 | 1479 | 0 | 0 | 75 | |
| SPC017482 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC017483 | 3B (VPg) | 1480 | 1501 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |