| RVdb StrainID | CNZ00031 | GenBank Accession | ON311163.1 |
| Species | RVC | Sequence Length | 7075 nt |
| Serotype | 28 Checked by RVdb | Serotype (GenBank) | 28 |
| Definition | Rhinovirus C strain C28_1 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | C28_1 | Sampling Date | 2021-03-22 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC017978 | 1A (VP4) | 587 | 787 | 0 | 0 | 201 | |
| SQC017979 | 1B (VP2) | 788 | 1573 | 0 | 0 | 786 | |
| SQC017980 | 1C (VP3) | 1574 | 2290 | 0 | 0 | 717 | |
| SQC017981 | 1D (VP1) | 2291 | 3112 | 0 | 0 | 822 | |
| SQC017982 | 2A (P2-A) | 3113 | 3538 | 0 | 0 | 426 | |
| SQC017983 | 2B (P2-B) | 3539 | 3835 | 0 | 0 | 297 | |
| SQC017984 | 2C (P2-C) | 3836 | 4813 | 0 | 0 | 978 | |
| SQC017985 | 3A (P3-A) | 4814 | 5038 | 0 | 0 | 225 | |
| SQC017986 | 3B (VPg) | 5039 | 5104 | 0 | 0 | 66 | |
| SQC017987 | 3D | 5654 | 7033 | 0 | 0 | 1380 | |
| SQC017988 | 5'UTR | 0 | 586 | 1 | 0 | 586 | |
| SQC017989 | CDS | 587 | 7036 | 0 | 0 | 6450 | |
| SQC017990 | protease 3C | 5105 | 5653 | 0 | 0 | 549 | |
| SQC017991 | VP4/2 | 587 | 1017 | 0 | 0 | 431 | |
| SQC017992 | genome | 1 | 7075 | 1 | 1 | 7075 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC017530 | CDS | 1 | 2149 | 0 | 0 | 2149 | |
| SPC017531 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC017532 | 3D | 1690 | 2149 | 0 | 0 | 460 | |
| SPC017533 | 2C (P2-C) | 1084 | 1409 | 0 | 0 | 326 | |
| SPC017534 | 1D (VP1) | 567 | 842 | 0 | 0 | 276 | |
| SPC017535 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC017536 | 1C (VP3) | 330 | 566 | 0 | 0 | 237 | |
| SPC017537 | protease 3C | 1507 | 1689 | 0 | 0 | 183 | |
| SPC017538 | 2A (P2-A) | 843 | 984 | 0 | 0 | 142 | |
| SPC017539 | 2B (P2-B) | 985 | 1083 | 0 | 0 | 99 | |
| SPC017540 | 3A (P3-A) | 1410 | 1484 | 0 | 0 | 75 | |
| SPC017541 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC017542 | 3B (VPg) | 1485 | 1506 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |