| RVdb StrainID | CNZ00026 | GenBank Accession | ON311168.1 |
| Species | RVC | Sequence Length | 7108 nt |
| Serotype | 19 Checked by RVdb | Serotype (GenBank) | 19 |
| Definition | Rhinovirus C strain C19_1 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | C19_1 | Sampling Date | 2020-03-06 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC017963 | 1A (VP4) | 595 | 795 | 0 | 0 | 201 | |
| SQC017964 | 1B (VP2) | 796 | 1611 | 0 | 0 | 816 | |
| SQC017965 | 1C (VP3) | 1612 | 2319 | 0 | 0 | 708 | |
| SQC017966 | 1D (VP1) | 2320 | 3144 | 0 | 0 | 825 | |
| SQC017967 | 2A (P2-A) | 3145 | 3570 | 0 | 0 | 426 | |
| SQC017968 | 2B (P2-B) | 3571 | 3867 | 0 | 0 | 297 | |
| SQC017969 | 2C (P2-C) | 3868 | 4842 | 0 | 0 | 975 | |
| SQC017970 | 3A (P3-A) | 4843 | 5067 | 0 | 0 | 225 | |
| SQC017971 | 3B (VPg) | 5068 | 5133 | 0 | 0 | 66 | |
| SQC017972 | 3D | 5683 | 7062 | 0 | 0 | 1380 | |
| SQC017973 | 5'UTR | 0 | 594 | 1 | 0 | 594 | |
| SQC017974 | CDS | 595 | 7065 | 0 | 0 | 6471 | |
| SQC017975 | protease 3C | 5134 | 5682 | 0 | 0 | 549 | |
| SQC017976 | VP4/2 | 595 | 1025 | 0 | 0 | 431 | |
| SQC017977 | genome | 1 | 7108 | 1 | 1 | 7108 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC017595 | CDS | 1 | 2156 | 0 | 0 | 2156 | |
| SPC017596 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC017597 | 3D | 1697 | 2156 | 0 | 0 | 460 | |
| SPC017598 | 2C (P2-C) | 1092 | 1416 | 0 | 0 | 325 | |
| SPC017599 | 1D (VP1) | 576 | 850 | 0 | 0 | 275 | |
| SPC017600 | 1B (VP2) | 68 | 339 | 0 | 0 | 272 | |
| SPC017601 | 1C (VP3) | 340 | 575 | 0 | 0 | 236 | |
| SPC017602 | protease 3C | 1514 | 1696 | 0 | 0 | 183 | |
| SPC017603 | 2A (P2-A) | 851 | 992 | 0 | 0 | 142 | |
| SPC017604 | 2B (P2-B) | 993 | 1091 | 0 | 0 | 99 | |
| SPC017605 | 3A (P3-A) | 1417 | 1491 | 0 | 0 | 75 | |
| SPC017606 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC017607 | 3B (VPg) | 1492 | 1513 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |