| RVdb StrainID | CNZ00016 | GenBank Accession | ON311178.1 |
| Species | RVC | Sequence Length | 7066 nt |
| Serotype | 8 Checked by RVdb | Serotype (GenBank) | 8 |
| Definition | Rhinovirus C strain C8_1 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | C8_1 | Sampling Date | 2021-01-25 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC017932 | 1A (VP4) | 580 | 786 | 0 | 0 | 207 | |
| SQC017933 | 1B (VP2) | 787 | 1565 | 0 | 0 | 779 | |
| SQC017934 | 1C (VP3) | 1566 | 2280 | 0 | 0 | 715 | |
| SQC017935 | 1D (VP1) | 2281 | 3120 | 0 | 0 | 840 | |
| SQC017936 | 2A (P2-A) | 3121 | 3528 | 0 | 0 | 408 | |
| SQC017937 | 2B (P2-B) | 3529 | 3825 | 0 | 0 | 297 | |
| SQC017938 | 2C (P2-C) | 3826 | 4803 | 0 | 0 | 978 | |
| SQC017939 | 3A (P3-A) | 4804 | 5028 | 0 | 0 | 225 | |
| SQC017940 | 3B (VPg) | 5029 | 5094 | 0 | 0 | 66 | |
| SQC017941 | 3D | 5644 | 7023 | 0 | 0 | 1380 | |
| SQC017942 | 5'UTR | 0 | 579 | 1 | 0 | 579 | |
| SQC017943 | CDS | 580 | 7026 | 0 | 0 | 6447 | |
| SQC017944 | protease 3C | 5095 | 5643 | 0 | 0 | 549 | |
| SQC017945 | VP4/2 | 580 | 1010 | 0 | 0 | 431 | |
| SQC017946 | genome | 1 | 7066 | 1 | 1 | 7066 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC017725 | CDS | 1 | 2148 | 0 | 0 | 2148 | |
| SPC017726 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC017727 | 3D | 1689 | 2148 | 0 | 0 | 460 | |
| SPC017728 | 2C (P2-C) | 1083 | 1408 | 0 | 0 | 326 | |
| SPC017729 | 1D (VP1) | 566 | 841 | 0 | 0 | 276 | |
| SPC017730 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC017731 | 1C (VP3) | 330 | 565 | 0 | 0 | 236 | |
| SPC017732 | protease 3C | 1506 | 1688 | 0 | 0 | 183 | |
| SPC017733 | 2A (P2-A) | 842 | 983 | 0 | 0 | 142 | |
| SPC017734 | 2B (P2-B) | 984 | 1082 | 0 | 0 | 99 | |
| SPC017735 | 3A (P3-A) | 1409 | 1483 | 0 | 0 | 75 | |
| SPC017736 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC017737 | 3B (VPg) | 1484 | 1505 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |