| RVdb StrainID | CNS07337 | GenBank Accession | OQ331223.1 |
| Species | RVC | Sequence Length | 7060 nt |
| Serotype | 53 Corrected by RVdb | Serotype (GenBank) | 26 |
| Definition | Rhinovirus C26 isolate RvC26/USA/f25a5/2020, complete genome | GenBank Submission Date | 2023-02-26 |
| Strain Name | RvC26/USA/f25a5/2020 | Sampling Date | 2020-03 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 2045069 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC023617 | 5'UTR | 58 | 608 | 1 | 0 | 551 | |
| SQC023618 | CDS | 609 | 7049 | 0 | 0 | 6441 | |
| SQC023619 | VP4/2 | 609 | 1039 | 0 | 0 | 431 | |
| SQC023620 | 3D | 5667 | 7046 | 0 | 0 | 1380 | |
| SQC023621 | 2C (P2-C) | 3849 | 4826 | 0 | 0 | 978 | |
| SQC023622 | 1D (VP1) | 2304 | 3125 | 0 | 0 | 822 | |
| SQC023623 | 1B (VP2) | 810 | 1595 | 0 | 0 | 786 | |
| SQC023624 | 1C (VP3) | 1596 | 2303 | 0 | 0 | 708 | |
| SQC023625 | protease 3C | 5118 | 5666 | 0 | 0 | 549 | |
| SQC023626 | 2A (P2-A) | 3126 | 3551 | 0 | 0 | 426 | |
| SQC023627 | 2B (P2-B) | 3552 | 3848 | 0 | 0 | 297 | |
| SQC023628 | 3A (P3-A) | 4827 | 5051 | 0 | 0 | 225 | |
| SQC023629 | 1A (VP4) | 609 | 809 | 0 | 0 | 201 | |
| SQC023630 | 3B (VPg) | 5052 | 5117 | 0 | 0 | 66 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC020027 | CDS | 1 | 2146 | 0 | 0 | 2146 | |
| SPC020066 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC020278 | 3D | 1687 | 2145 | 0 | 0 | 459 | |
| SPC020279 | 2C (P2-C) | 1081 | 1406 | 0 | 0 | 326 | |
| SPC020280 | 1D (VP1) | 566 | 839 | 0 | 0 | 274 | |
| SPC020281 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC020282 | 1C (VP3) | 330 | 565 | 0 | 0 | 236 | |
| SPC020283 | protease 3C | 1504 | 1686 | 0 | 0 | 183 | |
| SPC020284 | 2A (P2-A) | 840 | 980 | 0 | 0 | 141 | |
| SPC020285 | 2B (P2-B) | 984 | 1079 | 0 | 0 | 96 | |
| SPC020286 | 3A (P3-A) | 1404 | 1481 | 0 | 0 | 78 | |
| SPC020287 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPC020288 | 3B (VPg) | 1482 | 1502 | 0 | 0 | 21 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |