| RVdb StrainID | CNS07336 | GenBank Accession | OQ331222.1 |
| Species | RVC | Sequence Length | 7076 nt |
| Serotype | 19 Checked by RVdb | Serotype (GenBank) | 19 |
| Definition | Rhinovirus C19 isolate RvC19/USA/cf466/2020, complete genome | GenBank Submission Date | 2023-02-26 |
| Strain Name | RvC19/USA/cf466/2020 | Sampling Date | 2020-03 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1418043 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC023605 | 5'UTR | 142 | 582 | 1 | 0 | 441 | |
| SQC023606 | CDS | 583 | 7053 | 0 | 0 | 6471 | |
| SQC023607 | VP4/2 | 583 | 1013 | 0 | 0 | 431 | |
| SQC023608 | 3D | 5671 | 6845 | 0 | 1 | 1175 | |
| SQC023609 | 2C (P2-C) | 3853 | 4830 | 0 | 0 | 978 | |
| SQC023610 | 1D (VP1) | 2308 | 3132 | 0 | 0 | 825 | |
| SQC023611 | 1B (VP2) | 790 | 1569 | 0 | 0 | 780 | |
| SQC023612 | 1C (VP3) | 1570 | 2307 | 0 | 0 | 738 | |
| SQC023613 | protease 3C | 5122 | 5670 | 0 | 0 | 549 | |
| SQC023614 | 2A (P2-A) | 3133 | 3558 | 0 | 0 | 426 | |
| SQC023615 | 3A (P3-A) | 4831 | 5055 | 0 | 0 | 225 | |
| SQC023616 | 1A (VP4) | 583 | 789 | 0 | 0 | 207 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC020012 | CDS | 1 | 2156 | 0 | 0 | 2156 | |
| SPC020051 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC020115 | 3D | 1697 | 2143 | 0 | 0 | 447 | |
| SPC020116 | 2C (P2-C) | 1092 | 1416 | 0 | 0 | 325 | |
| SPC020117 | 1D (VP1) | 576 | 842 | 0 | 0 | 267 | |
| SPC020118 | 1B (VP2) | 68 | 331 | 0 | 0 | 264 | |
| SPC020119 | 1C (VP3) | 338 | 575 | 0 | 0 | 238 | |
| SPC020120 | protease 3C | 1514 | 1696 | 0 | 0 | 183 | |
| SPC020121 | 2A (P2-A) | 851 | 991 | 0 | 0 | 141 | |
| SPC020122 | 2B (P2-B) | 995 | 1090 | 0 | 0 | 96 | |
| SPC020123 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |