| RVdb StrainID | CNS07303 | GenBank Accession | OP342701.1 |
| Species | RVC | Sequence Length | 7046 nt |
| Serotype | 13 Checked by RVdb | Serotype (GenBank) | 13 |
| Definition | Rhinovirus C13 strain RVC13/China/2018/BJR46 polyprotein gene, partial cds | GenBank Submission Date | 2022-12-13 |
| Strain Name | RVC13/China/2018/BJR46 | Sampling Date | 2018-02-01 |
| Sampling Country | China | Sampling location | Beijing |
| Isolation Source | -N/A- | NCBI Taxon ID | 2777132 |
| Sequencing Technology | Illumina | Assembly Method | Geneious Prime v. 2022.1.1 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC023472 | 5'UTR | 1 | 618 | 0 | 0 | 618 | |
| SQC023473 | CDS | 619 | 7046 | 0 | 1 | 6428 | |
| SQC023474 | VP4/2 | 619 | 1049 | 0 | 0 | 431 | |
| SQC023475 | 3D | 5665 | 6993 | 0 | 0 | 1329 | |
| SQC023476 | 2C (P2-C) | 3847 | 4821 | 0 | 0 | 975 | |
| SQC023477 | 1D (VP1) | 2311 | 3126 | 0 | 0 | 816 | |
| SQC023478 | 1B (VP2) | 820 | 1611 | 0 | 0 | 792 | |
| SQC023479 | 1C (VP3) | 1612 | 2310 | 0 | 0 | 699 | |
| SQC023480 | protease 3C | 5116 | 5664 | 0 | 0 | 549 | |
| SQC023481 | 2A (P2-A) | 3127 | 3552 | 0 | 0 | 426 | |
| SQC023482 | 2B (P2-B) | 3553 | 3846 | 0 | 0 | 294 | |
| SQC023483 | 3A (P3-A) | 4822 | 5049 | 0 | 0 | 228 | |
| SQC023484 | 1A (VP4) | 619 | 819 | 0 | 0 | 201 | |
| SQC023485 | 3B (VPg) | 5050 | 5115 | 0 | 0 | 66 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC020043 | CDS | 1 | 2142 | 0 | 0 | 2142 | |
| SPC020082 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC020454 | 3D | 1683 | 2125 | 0 | 0 | 443 | |
| SPC020455 | 2C (P2-C) | 1077 | 1401 | 0 | 0 | 325 | |
| SPC020456 | 1D (VP1) | 565 | 836 | 0 | 0 | 272 | |
| SPC020457 | 1B (VP2) | 68 | 331 | 0 | 0 | 264 | |
| SPC020458 | 1C (VP3) | 332 | 564 | 0 | 0 | 233 | |
| SPC020459 | protease 3C | 1500 | 1682 | 0 | 0 | 183 | |
| SPC020460 | 2A (P2-A) | 837 | 978 | 0 | 0 | 142 | |
| SPC020461 | 2B (P2-B) | 979 | 1076 | 0 | 0 | 98 | |
| SPC020462 | 3A (P3-A) | 1402 | 1477 | 0 | 0 | 76 | |
| SPC020463 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC020464 | 3B (VPg) | 1478 | 1499 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 37733296 | Genetic diversity and characterization of rhinoviruses from Chinese clinical samples with a global perspective. | 2023 | Microbiol Spectr | View More |