| RVdb StrainID | CNS07294 | GenBank Accession | OP342692.1 |
| Species | RVC | Sequence Length | 7057 nt |
| Serotype | 36 Checked by RVdb | Serotype (GenBank) | 36 |
| Definition | Rhinovirus C36 strain RVC36/China/2017/BJR28 polyprotein gene, complete cds | GenBank Submission Date | 2022-12-13 |
| Strain Name | RVC36/China/2017/BJR28 | Sampling Date | 2017-12-26 |
| Sampling Country | China | Sampling location | Beijing |
| Isolation Source | -N/A- | NCBI Taxon ID | 1418041 |
| Sequencing Technology | Illumina | Assembly Method | Geneious Prime v. 2022.1.1 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC023342 | 5'UTR | 1 | 614 | 0 | 0 | 614 | |
| SQC023343 | CDS | 615 | 7049 | 0 | 0 | 6435 | |
| SQC023344 | VP4/2 | 615 | 1044 | 0 | 0 | 430 | |
| SQC023345 | 3D | 5667 | 7046 | 0 | 0 | 1380 | |
| SQC023346 | 2C (P2-C) | 3849 | 4814 | 0 | 0 | 966 | |
| SQC023347 | 1D (VP1) | 2310 | 3125 | 0 | 0 | 816 | |
| SQC023348 | 1B (VP2) | 822 | 1601 | 0 | 0 | 780 | |
| SQC023349 | 1C (VP3) | 1602 | 2309 | 0 | 0 | 708 | |
| SQC023350 | protease 3C | 5118 | 5666 | 0 | 0 | 549 | |
| SQC023351 | 2A (P2-A) | 3126 | 3551 | 0 | 0 | 426 | |
| SQC023352 | 2B (P2-B) | 3552 | 3848 | 0 | 0 | 297 | |
| SQC023353 | 3A (P3-A) | 4815 | 5051 | 0 | 0 | 237 | |
| SQC023354 | 1A (VP4) | 615 | 821 | 0 | 0 | 207 | |
| SQC023355 | 3B (VPg) | 5052 | 5117 | 0 | 0 | 66 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC020041 | CDS | 1 | 2144 | 0 | 0 | 2144 | |
| SPC020080 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC020432 | 3D | 1685 | 2144 | 0 | 0 | 460 | |
| SPC020433 | 2C (P2-C) | 1079 | 1400 | 0 | 0 | 322 | |
| SPC020434 | 1D (VP1) | 566 | 837 | 0 | 0 | 272 | |
| SPC020435 | 1B (VP2) | 70 | 329 | 0 | 0 | 260 | |
| SPC020436 | 1C (VP3) | 330 | 565 | 0 | 0 | 236 | |
| SPC020437 | protease 3C | 1502 | 1684 | 0 | 0 | 183 | |
| SPC020438 | 2A (P2-A) | 838 | 979 | 0 | 0 | 142 | |
| SPC020439 | 2B (P2-B) | 980 | 1078 | 0 | 0 | 99 | |
| SPC020440 | 3A (P3-A) | 1401 | 1479 | 0 | 0 | 79 | |
| SPC020441 | 1A (VP4) | 1 | 69 | 0 | 0 | 69 | |
| SPC020442 | 3B (VPg) | 1480 | 1501 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 37733296 | Genetic diversity and characterization of rhinoviruses from Chinese clinical samples with a global perspective. | 2023 | Microbiol Spectr | View More |