| RVdb StrainID | CNS07292 | GenBank Accession | OP114092.1 |
| Species | RVC | Sequence Length | 4304 nt |
| Serotype | 2 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Rhinovirus C isolate UFS-NGS_UNIT_Summer_SARI_E-Series polyprotein gene, partial cds | GenBank Submission Date | 2023-02-18 |
| Strain Name | UFS-NGS_UNIT_Summer_SARI_E-Series | Sampling Date | 2021 |
| Sampling Country | South Africa | Sampling location | Botshabelo District Hospital, Pelonomi Regional Hospital, and National District Hospital in the Free State Province |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC023318 | CDS | 1 | 4304 | 0 | 1 | 4304 | |
| SQC023319 | VP4/2 | 1 | 431 | 0 | 0 | 431 | |
| SQC023320 | 2C (P2-C) | 3232 | 4212 | 0 | 0 | 981 | |
| SQC023321 | 1D (VP1) | 1699 | 2511 | 0 | 0 | 813 | |
| SQC023322 | 1B (VP2) | 208 | 987 | 0 | 0 | 780 | |
| SQC023323 | 1C (VP3) | 988 | 1698 | 0 | 0 | 711 | |
| SQC023324 | 2A (P2-A) | 2512 | 2937 | 0 | 0 | 426 | |
| SQC023325 | 2B (P2-B) | 2938 | 3231 | 0 | 0 | 294 | |
| SQC023326 | 1A (VP4) | 1 | 207 | 0 | 0 | 207 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 36423125 | Metagenomic Analysis of Respiratory RNA Virome of Children with and without Severe Acute Respiratory Infection from the Free State, South Africa during COVID-19 Pandemic Reveals Higher Diversity and Abundance in Summer Compared with Winter Period. | 2022 | Viruses | View More |