| RVdb StrainID | CNS06048 | GenBank Accession | EF077280.1 |
| Species | RVC | Sequence Length | 7015 nt |
| Serotype | 2 Checked by RVdb | Serotype (GenBank) | 2 |
| Definition | Rhinovirus C2 isolate NAT045 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | NAT045 | Sampling Date | 2003-05-12 |
| Sampling Country | USA | Sampling location | California, San Francisco |
| Isolation Source | nasal lavage fluid from an upper respiratory infection | NCBI Taxon ID | 1219376 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC017528 | 1A (VP4) | 542 | 742 | 0 | 0 | 201 | |
| SQC017529 | 1B (VP2) | 743 | 1527 | 0 | 0 | 785 | |
| SQC017530 | 1C (VP3) | 1528 | 2239 | 0 | 0 | 712 | |
| SQC017531 | 1D (VP1) | 2240 | 3052 | 0 | 0 | 813 | |
| SQC017532 | 2A (P2-A) | 3053 | 3478 | 0 | 0 | 426 | |
| SQC017533 | 2B (P2-B) | 3479 | 3775 | 0 | 0 | 297 | |
| SQC017534 | 2C (P2-C) | 3776 | 4753 | 0 | 0 | 978 | |
| SQC017535 | 3'UTR | 6977 | 0 | 0 | 1 | 39 | |
| SQC017536 | 3A (P3-A) | 4754 | 4978 | 0 | 0 | 225 | |
| SQC017537 | 3B (VPg) | 4979 | 5044 | 0 | 0 | 66 | |
| SQC017538 | 3D | 5594 | 6973 | 0 | 0 | 1380 | |
| SQC017539 | 5'UTR | 0 | 541 | 1 | 0 | 541 | |
| SQC017540 | CDS | 542 | 6976 | 0 | 0 | 6435 | |
| SQC017541 | protease 3C | 5045 | 5593 | 0 | 0 | 549 | |
| SQC017542 | VP4/2 | 542 | 972 | 0 | 0 | 431 | |
| SQC017543 | genome | 1 | 7015 | 1 | 1 | 7015 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC000165 | CDS | 1 | 2144 | 0 | 0 | 2144 | |
| SPC000166 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC000167 | 3D | 1685 | 2144 | 0 | 0 | 460 | |
| SPC000168 | 2C (P2-C) | 1079 | 1404 | 0 | 0 | 326 | |
| SPC000169 | 1D (VP1) | 567 | 837 | 0 | 0 | 271 | |
| SPC000170 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC000171 | 1C (VP3) | 330 | 566 | 0 | 0 | 237 | |
| SPC000172 | protease 3C | 1502 | 1684 | 0 | 0 | 183 | |
| SPC000173 | 2A (P2-A) | 838 | 979 | 0 | 0 | 142 | |
| SPC000174 | 2B (P2-B) | 980 | 1078 | 0 | 0 | 99 | |
| SPC000175 | 3A (P3-A) | 1405 | 1479 | 0 | 0 | 75 | |
| SPC000176 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 17703411 | Pan-viral screening of respiratory tract infections in adults with and without asthma reveals unexpected human coronavirus and human rhinovirus diversity. | 2007 | J Infect Dis | View More |