| RVdb StrainID | CNS05993 | GenBank Accession | EF582387.1 |
| Species | RVC | Sequence Length | 7086 nt |
| Serotype | 6 Checked by RVdb | Serotype (GenBank) | 6 |
| Definition | Rhinovirus C6, complete genome | GenBank Submission Date | 2022-11-06 |
| Strain Name | 26 | Sampling Date | -N/A- |
| Sampling Country | China | Sampling location | Hong Kong |
| Isolation Source | nasopharyngeal aspirates of patients | NCBI Taxon ID | 1219378 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC017495 | 1A (VP4) | 612 | 812 | 0 | 0 | 201 | |
| SQC017496 | 1B (VP2) | 813 | 1598 | 0 | 0 | 786 | |
| SQC017497 | 1C (VP3) | 1599 | 2297 | 0 | 0 | 699 | |
| SQC017498 | 1D (VP1) | 2298 | 3122 | 0 | 0 | 825 | |
| SQC017499 | 2A (P2-A) | 3123 | 3548 | 0 | 0 | 426 | |
| SQC017500 | 2B (P2-B) | 3549 | 3839 | 0 | 0 | 291 | |
| SQC017501 | 2C (P2-C) | 3840 | 4814 | 0 | 0 | 975 | |
| SQC017502 | 3'UTR | 7041 | 0 | 0 | 1 | 46 | |
| SQC017503 | 3A (P3-A) | 4815 | 5042 | 0 | 0 | 228 | |
| SQC017504 | 3B (VPg) | 5043 | 5108 | 0 | 0 | 66 | |
| SQC017505 | 3D | 5658 | 7037 | 0 | 0 | 1380 | |
| SQC017506 | 5'UTR | 1 | 611 | 0 | 0 | 611 | |
| SQC017507 | CDS | 612 | 7040 | 0 | 0 | 6429 | |
| SQC017508 | protease 3C | 5109 | 5657 | 0 | 0 | 549 | |
| SQC017509 | VP4/2 | 612 | 1042 | 0 | 0 | 431 | |
| SQC017510 | genome | 1 | 7086 | 0 | 1 | 7086 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC000203 | CDS | 1 | 2142 | 0 | 0 | 2142 | |
| SPC000204 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC000205 | 3D | 1683 | 2142 | 0 | 0 | 460 | |
| SPC000206 | 2C (P2-C) | 1077 | 1401 | 0 | 0 | 325 | |
| SPC000207 | 1D (VP1) | 563 | 837 | 0 | 0 | 275 | |
| SPC000208 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC000209 | 1C (VP3) | 330 | 562 | 0 | 0 | 233 | |
| SPC000210 | protease 3C | 1500 | 1682 | 0 | 0 | 183 | |
| SPC000211 | 2A (P2-A) | 838 | 979 | 0 | 0 | 142 | |
| SPC000212 | 2B (P2-B) | 980 | 1076 | 0 | 0 | 97 | |
| SPC000213 | 3A (P3-A) | 1402 | 1477 | 0 | 0 | 76 | |
| SPC000214 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC000215 | 3B (VPg) | 1478 | 1499 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 17804649 | Clinical features and complete genome characterization of a distinct human rhinovirus (HRV) genetic cluster, probably representing a previously undetected HRV species, HRV-C, associated with acute respiratory illness in children. | 2007 | J Clin Microbiol | View More |