| RVdb StrainID | CNS03583 | GenBank Accession | KR997882.1 |
| Species | RVC | Sequence Length | 3338 nt |
| Serotype | 16 Checked by RVdb | Serotype (GenBank) | 16 |
| Definition | Rhinovirus C isolate HRV-C16_ID639T_5UTR/VP1 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRV-C16_ID639T_5UTR/VP1 | Sampling Date | 2008-05-08 |
| Sampling Country | Tanzania | Sampling location | 1 urban and 1 rural hospital in Tanzania |
| Isolation Source | nasopharynx | NCBI Taxon ID | 463676 |
| Sequencing Technology | Sanger dideoxy sequencing | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC016208 | 1A (VP4) | 456 | 656 | 0 | 0 | 201 | |
| SQC016209 | 1B (VP2) | 657 | 1439 | 0 | 0 | 783 | |
| SQC016210 | 1C (VP3) | 1440 | 2153 | 0 | 0 | 714 | |
| SQC016211 | 1D (VP1) | 2154 | 2972 | 0 | 0 | 819 | |
| SQC016212 | 2A (P2-A) | 2973 | 0 | 0 | 1 | 366 | |
| SQC016213 | 5'UTR | 1 | 455 | 0 | 0 | 455 | |
| SQC016214 | CDS | 456 | 0 | 0 | 1 | 2883 | |
| SQC016215 | VP4/2 | 456 | 890 | 0 | 0 | 435 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC005199 | CDS | 1 | 961 | 0 | 1 | 961 | |
| SPC005200 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC005201 | 1D (VP1) | 565 | 839 | 0 | 0 | 275 | |
| SPC005202 | 1B (VP2) | 68 | 328 | 0 | 0 | 261 | |
| SPC005203 | 1C (VP3) | 329 | 564 | 0 | 0 | 236 | |
| SPC005204 | 2A (P2-A) | 840 | 961 | 0 | 1 | 122 | |
| SPC005205 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 26670243 | Molecular Epidemiology of Human Rhinoviruses and Enteroviruses Highlights Their Diversity in Sub-Saharan Africa. | 2015 | Viruses | View More |