| RVdb StrainID | CNS03053 | GenBank Accession | KY460513.2 |
| Species | RVC | Sequence Length | 6429 nt |
| Serotype | 3 Checked by RVdb | Serotype (GenBank) | 3 |
| Definition | Rhinovirus C3 isolate TW-00002-2009 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | TW-00002-2009 | Sampling Date | 2009-12-29 |
| Sampling Country | China | Sampling location | Chang Gung Memorial Hospital, Taiwan |
| Isolation Source | nasopharyngeal | NCBI Taxon ID | 1219377 |
| Sequencing Technology | Illumina | Assembly Method | CLC Genomics Workbench v. 7.5 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC015878 | 1A (VP4) | 1 | 201 | 0 | 0 | 201 | |
| SQC015879 | 1B (VP2) | 202 | 990 | 0 | 0 | 789 | |
| SQC015880 | 1C (VP3) | 991 | 1689 | 0 | 0 | 699 | |
| SQC015881 | 1D (VP1) | 1690 | 2514 | 0 | 0 | 825 | |
| SQC015882 | 2A (P2-A) | 2515 | 2937 | 0 | 0 | 423 | |
| SQC015883 | 2B (P2-B) | 2938 | 3231 | 0 | 0 | 294 | |
| SQC015884 | 2C (P2-C) | 3232 | 4206 | 0 | 0 | 975 | |
| SQC015885 | 3A (P3-A) | 4207 | 4434 | 0 | 0 | 228 | |
| SQC015886 | 3B (VPg) | 4435 | 4500 | 0 | 0 | 66 | |
| SQC015887 | 3D | 5050 | 0 | 0 | 1 | 1380 | |
| SQC015888 | CDS | 1 | 0 | 0 | 1 | 6429 | |
| SQC015889 | protease 3C | 4501 | 5049 | 0 | 0 | 549 | |
| SQC015890 | VP4/2 | 1 | 431 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC006971 | CDS | 1 | 2143 | 0 | 0 | 2143 | |
| SPC006972 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC006973 | 3D | 1684 | 2143 | 0 | 0 | 460 | |
| SPC006974 | 2C (P2-C) | 1078 | 1402 | 0 | 0 | 325 | |
| SPC006975 | 1D (VP1) | 561 | 838 | 0 | 0 | 278 | |
| SPC006976 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC006977 | 1C (VP3) | 331 | 560 | 0 | 0 | 230 | |
| SPC006978 | protease 3C | 1501 | 1683 | 0 | 0 | 183 | |
| SPC006979 | 2A (P2-A) | 839 | 980 | 0 | 0 | 142 | |
| SPC006980 | 3A (P3-A) | 1403 | 1478 | 0 | 0 | 76 | |
| SPC006981 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC006982 | 3B (VPg) | 1479 | 1500 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 28424887 | A metagenomics study for the identification of respiratory viruses in mixed clinical specimens: an application of the iterative mapping approach. | 2017 | Arch Virol | View More |