| RVdb StrainID | CNS01878 | GenBank Accession | MH685695.1 |
| Species | RVC | Sequence Length | 6955 nt |
| Serotype | 51 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Rhinovirus C isolate E0-7 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | E0-7 | Sampling Date | 2013 |
| Sampling Country | Uganda | Sampling location | Tororo District Hospital |
| Isolation Source | nasopharynx | NCBI Taxon ID | 463676 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC015284 | 1A (VP4) | 564 | 770 | 0 | 0 | 207 | |
| SQC015285 | 1B (VP2) | 771 | 1550 | 0 | 0 | 780 | |
| SQC015286 | 1C (VP3) | 1551 | 2258 | 0 | 0 | 708 | |
| SQC015287 | 1D (VP1) | 2259 | 3071 | 0 | 0 | 813 | |
| SQC015288 | 2A (P2-A) | 3072 | 3497 | 0 | 0 | 426 | |
| SQC015289 | 2B (P2-B) | 3498 | 3794 | 0 | 0 | 297 | |
| SQC015290 | 2C (P2-C) | 3795 | 4769 | 0 | 0 | 975 | |
| SQC015291 | 3A (P3-A) | 4770 | 4994 | 0 | 0 | 225 | |
| SQC015292 | 3B (VPg) | 4995 | 5060 | 0 | 0 | 66 | |
| SQC015293 | 3D | 5610 | 0 | 0 | 1 | 1346 | |
| SQC015294 | 5'UTR | 0 | 563 | 1 | 0 | 563 | |
| SQC015295 | CDS | 564 | 0 | 0 | 1 | 6392 | |
| SQC015296 | protease 3C | 5061 | 5609 | 0 | 0 | 549 | |
| SQC015297 | VP4/2 | 564 | 993 | 0 | 0 | 430 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC008362 | CDS | 1 | 2131 | 0 | 0 | 2131 | |
| SPC008363 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC008364 | 3D | 1683 | 2131 | 0 | 1 | 449 | |
| SPC008365 | 2C (P2-C) | 1078 | 1402 | 0 | 0 | 325 | |
| SPC008366 | 1D (VP1) | 566 | 836 | 0 | 0 | 271 | |
| SPC008367 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC008368 | 1C (VP3) | 330 | 565 | 0 | 0 | 236 | |
| SPC008369 | protease 3C | 1500 | 1682 | 0 | 0 | 183 | |
| SPC008370 | 2A (P2-A) | 837 | 978 | 0 | 0 | 142 | |
| SPC008371 | 2B (P2-B) | 979 | 1077 | 0 | 0 | 99 | |
| SPC008372 | 3A (P3-A) | 1403 | 1477 | 0 | 0 | 75 | |
| SPC008373 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC008374 | 3B (VPg) | 1478 | 1499 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 31220115 | Metagenomic next-generation sequencing of samples from pediatric febrile illness in Tororo, Uganda. | 2019 | PLoS One | View More |