| RVdb StrainID | CNS01868 | GenBank Accession | MH685706.1 |
| Species | RVC | Sequence Length | 5777 nt |
| Serotype | 6 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Rhinovirus C isolate E0-04 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | E0-04 | Sampling Date | 2013 |
| Sampling Country | Uganda | Sampling location | Tororo District Hospital |
| Isolation Source | nasopharynx | NCBI Taxon ID | 463676 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC015269 | 1A (VP4) | 423 | 623 | 0 | 0 | 201 | |
| SQC015270 | 1B (VP2) | 624 | 1409 | 0 | 0 | 786 | |
| SQC015271 | 1C (VP3) | 1410 | 2108 | 0 | 0 | 699 | |
| SQC015272 | 1D (VP1) | 2109 | 2933 | 0 | 0 | 825 | |
| SQC015273 | 2A (P2-A) | 2934 | 3356 | 0 | 0 | 423 | |
| SQC015274 | 2B (P2-B) | 3357 | 3650 | 0 | 0 | 294 | |
| SQC015275 | 2C (P2-C) | 3651 | 4625 | 0 | 0 | 975 | |
| SQC015276 | 3A (P3-A) | 4626 | 4853 | 0 | 0 | 228 | |
| SQC015277 | 3B (VPg) | 4854 | 4919 | 0 | 0 | 66 | |
| SQC015278 | 5'UTR | 0 | 422 | 1 | 0 | 422 | |
| SQC015279 | CDS | 423 | 0 | 0 | 1 | 5355 | |
| SQC015280 | protease 3C | 4920 | 5468 | 0 | 0 | 549 | |
| SQC015281 | VP4/2 | 423 | 853 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC008447 | CDS | 1 | 1785 | 0 | 1 | 1785 | |
| SPC008448 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC008449 | 2C (P2-C) | 1077 | 1401 | 0 | 0 | 325 | |
| SPC008450 | 1D (VP1) | 560 | 837 | 0 | 0 | 278 | |
| SPC008451 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC008452 | 1C (VP3) | 330 | 559 | 0 | 0 | 230 | |
| SPC008453 | protease 3C | 1500 | 1682 | 0 | 0 | 183 | |
| SPC008454 | 2A (P2-A) | 838 | 979 | 0 | 0 | 142 | |
| SPC008455 | 3A (P3-A) | 1402 | 1477 | 0 | 0 | 76 | |
| SPC008456 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC008457 | 3B (VPg) | 1478 | 1499 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 31220115 | Metagenomic next-generation sequencing of samples from pediatric febrile illness in Tororo, Uganda. | 2019 | PLoS One | View More |