| RVdb StrainID | CNS01368 | GenBank Accession | MN163128.1 |
| Species | RVC | Sequence Length | 7096 nt |
| Serotype | 56 Checked by RVdb | Serotype (GenBank) | 56 |
| Definition | Rhinovirus C56 strain HRVC56/02/ZJ/CHN/2017 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | HRVC56/02/ZJ/CHN/2017 | Sampling Date | 2017-03 |
| Sampling Country | China | Sampling location | hangzhou |
| Isolation Source | -N/A- | NCBI Taxon ID | 2094116 |
| Sequencing Technology | Illumina | Assembly Method | Megahit v. 1.0 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC015083 | 1A (VP4) | 600 | 800 | 0 | 0 | 201 | |
| SQC015084 | 1B (VP2) | 801 | 1586 | 0 | 0 | 786 | |
| SQC015085 | 1C (VP3) | 1587 | 2304 | 0 | 0 | 718 | |
| SQC015086 | 1D (VP1) | 2305 | 3143 | 0 | 0 | 839 | |
| SQC015087 | 2A (P2-A) | 3144 | 3569 | 0 | 0 | 426 | |
| SQC015088 | 2B (P2-B) | 3570 | 3866 | 0 | 0 | 297 | |
| SQC015089 | 2C (P2-C) | 3867 | 4844 | 0 | 0 | 978 | |
| SQC015090 | 3A (P3-A) | 4845 | 5069 | 0 | 0 | 225 | |
| SQC015091 | 3B (VPg) | 5070 | 5135 | 0 | 0 | 66 | |
| SQC015092 | 3D | 5685 | 7064 | 0 | 0 | 1380 | |
| SQC015093 | 5'UTR | 0 | 599 | 1 | 0 | 599 | |
| SQC015094 | CDS | 600 | 7067 | 0 | 0 | 6468 | |
| SQC015095 | protease 3C | 5136 | 5684 | 0 | 0 | 549 | |
| SQC015096 | VP4/2 | 600 | 1030 | 0 | 0 | 431 | |
| SQC015097 | genome | 1 | 7096 | 1 | 1 | 7096 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC011261 | CDS | 1 | 2155 | 0 | 0 | 2155 | |
| SPC011262 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC011263 | 3D | 1696 | 2155 | 0 | 0 | 460 | |
| SPC011264 | 2C (P2-C) | 1090 | 1415 | 0 | 0 | 326 | |
| SPC011265 | 1D (VP1) | 567 | 848 | 0 | 0 | 282 | |
| SPC011266 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC011267 | 1C (VP3) | 330 | 566 | 0 | 0 | 237 | |
| SPC011268 | protease 3C | 1513 | 1695 | 0 | 0 | 183 | |
| SPC011269 | 2A (P2-A) | 849 | 990 | 0 | 0 | 142 | |
| SPC011270 | 2B (P2-B) | 991 | 1089 | 0 | 0 | 99 | |
| SPC011271 | 3A (P3-A) | 1416 | 1490 | 0 | 0 | 75 | |
| SPC011272 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC011273 | 3B (VPg) | 1491 | 1512 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 32127629 | High resolution metagenomic characterization of complex infectomes in paediatric acute respiratory infection. | 2020 | Sci Rep | View More |