| RVdb StrainID | CNS01213 | GenBank Accession | MW587053.1 |
| Species | RVC | Sequence Length | 6966 nt |
| Serotype | 31 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Rhinovirus C isolate S0425ZDP polyprotein gene, complete cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | S0425ZDP | Sampling Date | from 2016-05 to 2017-12 |
| Sampling Country | China | Sampling location | Wuhan |
| Isolation Source | bronchoalveolar lavage fluid | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Megahit v. v1.1.3 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC014987 | 1A (VP4) | 481 | 681 | 0 | 0 | 201 | |
| SQC014988 | 1B (VP2) | 682 | 1467 | 0 | 0 | 786 | |
| SQC014989 | 1C (VP3) | 1468 | 2181 | 0 | 0 | 714 | |
| SQC014990 | 1D (VP1) | 2182 | 3003 | 0 | 0 | 822 | |
| SQC014991 | 2A (P2-A) | 3004 | 3429 | 0 | 0 | 426 | |
| SQC014992 | 2B (P2-B) | 3430 | 3726 | 0 | 0 | 297 | |
| SQC014993 | 2C (P2-C) | 3727 | 4704 | 0 | 0 | 978 | |
| SQC014994 | 3A (P3-A) | 4705 | 4929 | 0 | 0 | 225 | |
| SQC014995 | 3B (VPg) | 4930 | 4995 | 0 | 0 | 66 | |
| SQC014996 | 3D | 5545 | 6924 | 0 | 0 | 1380 | |
| SQC014997 | 5'UTR | 0 | 480 | 1 | 0 | 480 | |
| SQC014998 | CDS | 481 | 6927 | 0 | 0 | 6447 | |
| SQC014999 | protease 3C | 4996 | 5544 | 0 | 0 | 549 | |
| SQC015000 | VP4/2 | 481 | 911 | 0 | 0 | 431 | |
| SQC015001 | genome | 1 | 6966 | 1 | 1 | 6966 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC017252 | CDS | 1 | 2148 | 0 | 0 | 2148 | |
| SPC017253 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC017254 | 3D | 1689 | 2148 | 0 | 0 | 460 | |
| SPC017255 | 2C (P2-C) | 1083 | 1408 | 0 | 0 | 326 | |
| SPC017256 | 1D (VP1) | 566 | 841 | 0 | 0 | 276 | |
| SPC017257 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC017258 | 1C (VP3) | 330 | 565 | 0 | 0 | 236 | |
| SPC017259 | protease 3C | 1506 | 1688 | 0 | 0 | 183 | |
| SPC017260 | 2A (P2-A) | 842 | 983 | 0 | 0 | 142 | |
| SPC017261 | 2B (P2-B) | 984 | 1082 | 0 | 0 | 99 | |
| SPC017262 | 3A (P3-A) | 1409 | 1483 | 0 | 0 | 75 | |
| SPC017263 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC017264 | 3B (VPg) | 1484 | 1505 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35176118 | Total infectome characterization of respiratory infections in pre-COVID-19 Wuhan, China. | 2022 | PLoS Pathog | View More |