RVdb StrainID CNS01213 GenBank Accession MW587053.1
Species RVC Sequence Length 6966 nt
Serotype 31  Added by RVdb Serotype (GenBank) -N/A-
Definition Rhinovirus C isolate S0425ZDP polyprotein gene, complete cds GenBank Submission Date 2022-11-03
Strain Name S0425ZDP Sampling Date from 2016-05 to 2017-12
Sampling Country China Sampling location Wuhan
Isolation Source bronchoalveolar lavage fluid NCBI Taxon ID 463676
Sequencing Technology Illumina Assembly Method Megahit v. v1.1.3

Download selected NT sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SQC014987 1A (VP4) 481 681 0 0 201
SQC014988 1B (VP2) 682 1467 0 0 786
SQC014989 1C (VP3) 1468 2181 0 0 714
SQC014990 1D (VP1) 2182 3003 0 0 822
SQC014991 2A (P2-A) 3004 3429 0 0 426
SQC014992 2B (P2-B) 3430 3726 0 0 297
SQC014993 2C (P2-C) 3727 4704 0 0 978
SQC014994 3A (P3-A) 4705 4929 0 0 225
SQC014995 3B (VPg) 4930 4995 0 0 66
SQC014996 3D 5545 6924 0 0 1380
SQC014997 5'UTR 0 480 1 0 480
SQC014998 CDS 481 6927 0 0 6447
SQC014999 protease 3C 4996 5544 0 0 549
SQC015000 VP4/2 481 911 0 0 431
SQC015001 genome 1 6966 1 1 6966
Download selected AA sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SPC017252 CDS 1 2148 0 0 2148
SPC017253 VP4/2 1 145 0 0 145
SPC017254 3D 1689 2148 0 0 460
SPC017255 2C (P2-C) 1083 1408 0 0 326
SPC017256 1D (VP1) 566 841 0 0 276
SPC017257 1B (VP2) 68 329 0 0 262
SPC017258 1C (VP3) 330 565 0 0 236
SPC017259 protease 3C 1506 1688 0 0 183
SPC017260 2A (P2-A) 842 983 0 0 142
SPC017261 2B (P2-B) 984 1082 0 0 99
SPC017262 3A (P3-A) 1409 1483 0 0 75
SPC017263 1A (VP4) 1 67 0 0 67
SPC017264 3B (VPg) 1484 1505 0 0 22
PMID Title Publication Year Journal View in RVdb
35176118 Total infectome characterization of respiratory infections in pre-COVID-19 Wuhan, China. 2022 PLoS Pathog View More