| RVdb StrainID | CNS00063 | GenBank Accession | OL961518.1 |
| Species | RVC | Sequence Length | 7064 nt |
| Serotype | 20 Checked by RVdb | Serotype (GenBank) | 20 |
| Definition | Rhinovirus C20 strain RvC20/USA/2021/5AUZVQ, complete genome | GenBank Submission Date | 2022-11-06 |
| Strain Name | RvC20/USA/2021/5AUZVQ | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1418062 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC013602 | 1A (VP4) | 585 | 785 | 0 | 0 | 201 | |
| SQC013603 | 1B (VP2) | 786 | 1571 | 0 | 0 | 786 | |
| SQC013604 | 1C (VP3) | 1572 | 2288 | 0 | 0 | 717 | |
| SQC013605 | 1D (VP1) | 2289 | 3110 | 0 | 0 | 822 | |
| SQC013606 | 2A (P2-A) | 3111 | 3536 | 0 | 0 | 426 | |
| SQC013607 | 2B (P2-B) | 3537 | 3833 | 0 | 0 | 297 | |
| SQC013608 | 2C (P2-C) | 3834 | 4811 | 0 | 0 | 978 | |
| SQC013609 | 3'UTR | 7035 | 0 | 0 | 1 | 27 | |
| SQC013610 | 3A (P3-A) | 4812 | 5036 | 0 | 0 | 225 | |
| SQC013611 | 3B (VPg) | 5037 | 5102 | 0 | 0 | 66 | |
| SQC013612 | 3D | 5652 | 7031 | 0 | 0 | 1380 | |
| SQC013613 | 5'UTR | 0 | 584 | 1 | 0 | 584 | |
| SQC013614 | CDS | 585 | 7034 | 0 | 0 | 6450 | |
| SQC013615 | protease 3C | 5103 | 5651 | 0 | 0 | 549 | |
| SQC013616 | VP4/2 | 585 | 1015 | 0 | 0 | 431 | |
| SQC013617 | genome | 1 | 7064 | 1 | 1 | 7064 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC016068 | CDS | 1 | 2149 | 0 | 0 | 2149 | |
| SPC016069 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC016070 | 3D | 1690 | 2149 | 0 | 0 | 460 | |
| SPC016071 | 2C (P2-C) | 1084 | 1409 | 0 | 0 | 326 | |
| SPC016072 | 1D (VP1) | 569 | 842 | 0 | 0 | 274 | |
| SPC016073 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC016074 | 1C (VP3) | 330 | 568 | 0 | 0 | 239 | |
| SPC016075 | protease 3C | 1507 | 1689 | 0 | 0 | 183 | |
| SPC016076 | 2A (P2-A) | 843 | 984 | 0 | 0 | 142 | |
| SPC016077 | 2B (P2-B) | 985 | 1083 | 0 | 0 | 99 | |
| SPC016078 | 3A (P3-A) | 1410 | 1484 | 0 | 0 | 75 | |
| SPC016079 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC016080 | 3B (VPg) | 1485 | 1506 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |