| RVdb StrainID | CNS00058 | GenBank Accession | OL961537.1 |
| Species | RVC | Sequence Length | 7048 nt |
| Serotype | 3 Checked by RVdb | Serotype (GenBank) | 3 |
| Definition | Rhinovirus C3 strain RvC3/USA/2021/PTDPQ7, complete genome | GenBank Submission Date | 2022-11-06 |
| Strain Name | RvC3/USA/2021/PTDPQ7 | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1219377 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC013586 | 1A (VP4) | 568 | 768 | 0 | 0 | 201 | |
| SQC013587 | 1B (VP2) | 769 | 1557 | 0 | 0 | 789 | |
| SQC013588 | 1C (VP3) | 1558 | 2256 | 0 | 0 | 699 | |
| SQC013589 | 1D (VP1) | 2257 | 3081 | 0 | 0 | 825 | |
| SQC013590 | 2A (P2-A) | 3082 | 3507 | 0 | 0 | 426 | |
| SQC013591 | 2B (P2-B) | 3508 | 3798 | 0 | 0 | 291 | |
| SQC013592 | 2C (P2-C) | 3799 | 4773 | 0 | 0 | 975 | |
| SQC013593 | 3'UTR | 7000 | 7047 | 0 | 0 | 48 | |
| SQC013594 | 3A (P3-A) | 4774 | 5001 | 0 | 0 | 228 | |
| SQC013595 | 3B (VPg) | 5002 | 5067 | 0 | 0 | 66 | |
| SQC013596 | 3D | 5617 | 6996 | 0 | 0 | 1380 | |
| SQC013597 | 5'UTR | 0 | 567 | 1 | 0 | 567 | |
| SQC013598 | CDS | 568 | 6999 | 0 | 0 | 6432 | |
| SQC013599 | protease 3C | 5068 | 5616 | 0 | 0 | 549 | |
| SQC013600 | VP4/2 | 568 | 998 | 0 | 0 | 431 | |
| SQC013601 | genome | 1 | 7048 | 1 | 0 | 7048 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC016133 | CDS | 1 | 2143 | 0 | 0 | 2143 | |
| SPC016134 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC016135 | 3D | 1684 | 2143 | 0 | 0 | 460 | |
| SPC016136 | 2C (P2-C) | 1078 | 1402 | 0 | 0 | 325 | |
| SPC016137 | 1D (VP1) | 561 | 838 | 0 | 0 | 278 | |
| SPC016138 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC016139 | 1C (VP3) | 331 | 560 | 0 | 0 | 230 | |
| SPC016140 | protease 3C | 1501 | 1683 | 0 | 0 | 183 | |
| SPC016141 | 2A (P2-A) | 839 | 979 | 0 | 0 | 141 | |
| SPC016142 | 2B (P2-B) | 980 | 1077 | 0 | 0 | 98 | |
| SPC016143 | 3A (P3-A) | 1403 | 1478 | 0 | 0 | 76 | |
| SPC016144 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC016145 | 3B (VPg) | 1479 | 1500 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |