| RVdb StrainID | CNS00053 | GenBank Accession | OM001407.1 |
| Species | RVC | Sequence Length | 6946 nt |
| Serotype | 1 Checked by RVdb | Serotype (GenBank) | 1 |
| Definition | Rhinovirus C1 strain RvC1/USA/2021/9HZPGH, complete genome | GenBank Submission Date | 2022-11-06 |
| Strain Name | RvC1/USA/2021/9HZPGH | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1219416 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC013570 | 1A (VP4) | 479 | 685 | 0 | 0 | 207 | |
| SQC013571 | 1B (VP2) | 686 | 1470 | 0 | 0 | 785 | |
| SQC013572 | 1C (VP3) | 1471 | 2179 | 0 | 0 | 709 | |
| SQC013573 | 1D (VP1) | 2180 | 2995 | 0 | 0 | 816 | |
| SQC013574 | 2A (P2-A) | 2996 | 3418 | 0 | 0 | 423 | |
| SQC013575 | 2B (P2-B) | 3419 | 3712 | 0 | 0 | 294 | |
| SQC013576 | 2C (P2-C) | 3713 | 4687 | 0 | 0 | 975 | |
| SQC013577 | 3'UTR | 6914 | 0 | 0 | 1 | 33 | |
| SQC013578 | 3A (P3-A) | 4688 | 4915 | 0 | 0 | 228 | |
| SQC013579 | 3B (VPg) | 4916 | 4981 | 0 | 0 | 66 | |
| SQC013580 | 3D | 5531 | 6910 | 0 | 0 | 1380 | |
| SQC013581 | 5'UTR | 0 | 478 | 1 | 0 | 478 | |
| SQC013582 | CDS | 479 | 6913 | 0 | 0 | 6435 | |
| SQC013583 | protease 3C | 4982 | 5530 | 0 | 0 | 549 | |
| SQC013584 | VP4/2 | 479 | 909 | 0 | 0 | 431 | |
| SQC013585 | genome | 1 | 6946 | 1 | 1 | 6946 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC015952 | CDS | 1 | 2144 | 0 | 0 | 2144 | |
| SPC015953 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC015954 | 3D | 1685 | 2144 | 0 | 0 | 460 | |
| SPC015955 | 2C (P2-C) | 1079 | 1403 | 0 | 0 | 325 | |
| SPC015956 | 1D (VP1) | 565 | 839 | 0 | 0 | 275 | |
| SPC015957 | 1B (VP2) | 68 | 331 | 0 | 0 | 264 | |
| SPC015958 | 1C (VP3) | 332 | 564 | 0 | 0 | 233 | |
| SPC015959 | protease 3C | 1502 | 1684 | 0 | 0 | 183 | |
| SPC015960 | 2A (P2-A) | 840 | 980 | 0 | 0 | 141 | |
| SPC015961 | 2B (P2-B) | 981 | 1078 | 0 | 0 | 98 | |
| SPC015962 | 3A (P3-A) | 1404 | 1479 | 0 | 0 | 76 | |
| SPC015963 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC015964 | 3B (VPg) | 1480 | 1501 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |