| RVdb StrainID | CNS00048 | GenBank Accession | OM001443.1 |
| Species | RVC | Sequence Length | 7045 nt |
| Serotype | 55 Checked by RVdb | Serotype (GenBank) | 55 |
| Definition | Rhinovirus C55 strain RvC55/USA/2021/P7JDPJ, complete genome | GenBank Submission Date | 2022-11-06 |
| Strain Name | RvC55/USA/2021/P7JDPJ | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 2555550 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC013555 | 1A (VP4) | 596 | 796 | 0 | 0 | 201 | |
| SQC013556 | 1B (VP2) | 797 | 1579 | 0 | 0 | 783 | |
| SQC013557 | 1C (VP3) | 1580 | 2287 | 0 | 0 | 708 | |
| SQC013558 | 1D (VP1) | 2288 | 3112 | 0 | 0 | 825 | |
| SQC013559 | 2A (P2-A) | 3113 | 3535 | 0 | 0 | 423 | |
| SQC013560 | 2B (P2-B) | 3536 | 3832 | 0 | 0 | 297 | |
| SQC013561 | 2C (P2-C) | 3833 | 4810 | 0 | 0 | 978 | |
| SQC013562 | 3A (P3-A) | 4811 | 5035 | 0 | 0 | 225 | |
| SQC013563 | 3B (VPg) | 5036 | 5101 | 0 | 0 | 66 | |
| SQC013564 | 3D | 5651 | 7030 | 0 | 0 | 1380 | |
| SQC013565 | 5'UTR | 0 | 595 | 1 | 0 | 595 | |
| SQC013566 | CDS | 596 | 7033 | 0 | 0 | 6438 | |
| SQC013567 | protease 3C | 5102 | 5650 | 0 | 0 | 549 | |
| SQC013568 | VP4/2 | 596 | 1026 | 0 | 0 | 431 | |
| SQC013569 | genome | 1 | 7045 | 1 | 1 | 7045 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC016017 | CDS | 1 | 2145 | 0 | 0 | 2145 | |
| SPC016018 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC016019 | 3D | 1686 | 2145 | 0 | 0 | 460 | |
| SPC016020 | 2C (P2-C) | 1080 | 1405 | 0 | 0 | 326 | |
| SPC016021 | 1D (VP1) | 565 | 839 | 0 | 0 | 275 | |
| SPC016022 | 1B (VP2) | 68 | 328 | 0 | 0 | 261 | |
| SPC016023 | 1C (VP3) | 329 | 564 | 0 | 0 | 236 | |
| SPC016024 | protease 3C | 1503 | 1685 | 0 | 0 | 183 | |
| SPC016025 | 2A (P2-A) | 840 | 980 | 0 | 0 | 141 | |
| SPC016026 | 2B (P2-B) | 981 | 1079 | 0 | 0 | 99 | |
| SPC016027 | 3A (P3-A) | 1406 | 1480 | 0 | 0 | 75 | |
| SPC016028 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC016029 | 3B (VPg) | 1481 | 1502 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |