| RVdb StrainID | CNS00038 | GenBank Accession | ON311156.1 |
| Species | RVC | Sequence Length | 6956 nt |
| Serotype | 43 Checked by RVdb | Serotype (GenBank) | 43 |
| Definition | Rhinovirus C43 strain C43_2 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | C43_2 | Sampling Date | 2020-08-10 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1219413 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC013525 | 1A (VP4) | 515 | 715 | 0 | 0 | 201 | |
| SQC013526 | 1B (VP2) | 716 | 1504 | 0 | 0 | 789 | |
| SQC013527 | 1C (VP3) | 1505 | 2203 | 0 | 0 | 699 | |
| SQC013528 | 1D (VP1) | 2204 | 3019 | 0 | 0 | 816 | |
| SQC013529 | 2A (P2-A) | 3020 | 3442 | 0 | 0 | 423 | |
| SQC013530 | 2B (P2-B) | 3443 | 3736 | 0 | 0 | 294 | |
| SQC013531 | 2C (P2-C) | 3737 | 4711 | 0 | 0 | 975 | |
| SQC013532 | 3A (P3-A) | 4712 | 4939 | 0 | 0 | 228 | |
| SQC013533 | 3B (VPg) | 4940 | 5005 | 0 | 0 | 66 | |
| SQC013534 | 3D | 5555 | 6934 | 0 | 0 | 1380 | |
| SQC013535 | 5'UTR | 0 | 514 | 1 | 0 | 514 | |
| SQC013536 | CDS | 515 | 6937 | 0 | 0 | 6423 | |
| SQC013537 | protease 3C | 5006 | 5554 | 0 | 0 | 549 | |
| SQC013538 | VP4/2 | 515 | 945 | 0 | 0 | 431 | |
| SQC013539 | genome | 1 | 6956 | 1 | 1 | 6956 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC017446 | CDS | 1 | 2140 | 0 | 0 | 2140 | |
| SPC017447 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC017448 | 3D | 1681 | 2140 | 0 | 0 | 460 | |
| SPC017449 | 2C (P2-C) | 1075 | 1399 | 0 | 0 | 325 | |
| SPC017450 | 1D (VP1) | 561 | 835 | 0 | 0 | 275 | |
| SPC017451 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC017452 | 1C (VP3) | 331 | 560 | 0 | 0 | 230 | |
| SPC017453 | protease 3C | 1498 | 1680 | 0 | 0 | 183 | |
| SPC017454 | 2A (P2-A) | 836 | 977 | 0 | 0 | 142 | |
| SPC017455 | 3A (P3-A) | 1400 | 1475 | 0 | 0 | 76 | |
| SPC017456 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC017457 | 3B (VPg) | 1476 | 1497 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |