| RVdb StrainID | CNP06047 | GenBank Accession | EF186077.2 |
| Species | RVC | Sequence Length | 7134 nt |
| Serotype | 3 Checked by RVdb | Serotype (GenBank) | 3 |
| Definition | Human rhinovirus C3 strain HRV-QPM, complete genome | GenBank Submission Date | 2022-11-06 |
| Strain Name | HRV-QPM | Sampling Date | 2003 |
| Sampling Country | Australia | Sampling location | Queensland |
| Isolation Source | nasopharyngeal aspirate | NCBI Taxon ID | 1219377 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC013059 | 1A (VP4) | 613 | 813 | 0 | 0 | 201 | |
| SQC013060 | 1B (VP2) | 814 | 1602 | 0 | 0 | 789 | |
| SQC013061 | 1C (VP3) | 1603 | 2301 | 0 | 0 | 699 | |
| SQC013062 | 1D (VP1) | 2302 | 3126 | 0 | 0 | 825 | |
| SQC013063 | 2A (P2-A) | 3127 | 3552 | 0 | 0 | 426 | |
| SQC013064 | 2B (P2-B) | 3553 | 3843 | 0 | 0 | 291 | |
| SQC013065 | 2C (P2-C) | 3844 | 4818 | 0 | 0 | 975 | |
| SQC013066 | 3'UTR | 7045 | 7092 | 0 | 0 | 48 | |
| SQC013067 | 3A (P3-A) | 4819 | 5046 | 0 | 0 | 228 | |
| SQC013068 | 3B (VPg) | 5047 | 5112 | 0 | 0 | 66 | |
| SQC013069 | 3D | 5662 | 7041 | 0 | 0 | 1380 | |
| SQC013070 | 5'UTR | 1 | 612 | 0 | 0 | 612 | |
| SQC013071 | CDS | 613 | 7044 | 0 | 0 | 6432 | |
| SQC013072 | protease 3C | 5113 | 5661 | 0 | 0 | 549 | |
| SQC013073 | VP4/2 | 613 | 1043 | 0 | 0 | 431 | |
| SQC013074 | genome | 1 | 7134 | 0 | 0 | 7134 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC000038 | CDS | 1 | 2143 | 0 | 0 | 2143 | |
| SPC000039 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC000040 | 3D | 1684 | 2142 | 0 | 0 | 459 | |
| SPC000041 | 2C (P2-C) | 1078 | 1402 | 0 | 0 | 325 | |
| SPC000042 | 1D (VP1) | 564 | 838 | 0 | 0 | 275 | |
| SPC000043 | 1B (VP2) | 68 | 330 | 0 | 0 | 263 | |
| SPC000044 | 1C (VP3) | 331 | 563 | 0 | 0 | 233 | |
| SPC000045 | protease 3C | 1501 | 1683 | 0 | 0 | 183 | |
| SPC000046 | 2A (P2-A) | 839 | 980 | 0 | 0 | 142 | |
| SPC000047 | 2B (P2-B) | 981 | 1077 | 0 | 0 | 97 | |
| SPC000048 | 3A (P3-A) | 1403 | 1478 | 0 | 0 | 76 | |
| SPC000049 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC000050 | 3B (VPg) | 1479 | 1500 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 17482871 | Characterisation of a newly identified human rhinovirus, HRV-QPM, discovered in infants with bronchiolitis. | 2007 | J Clin Virol | View More |