| RVdb StrainID | CNP04262 | GenBank Accession | KF688606.1 |
| Species | RVC | Sequence Length | 6928 nt |
| Serotype | 50 Checked by RVdb | Serotype (GenBank) | 50 |
| Definition | Rhinovirus C50 strain human/Australia/SG1/2008, partial genome | GenBank Submission Date | 2022-11-03 |
| Strain Name | human/Australia/SG1/2008 | Sampling Date | 2008-07-26 |
| Sampling Country | Australia | Sampling location | -N/A- |
| Isolation Source | female with influenza-like illness | NCBI Taxon ID | 2777135 |
| Sequencing Technology | Illumina; Sanger dideoxy sequencing | Assembly Method | Geneious v. 6.1 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC012123 | 1A (VP4) | 439 | 639 | 0 | 0 | 201 | |
| SQC012124 | 1B (VP2) | 640 | 1425 | 0 | 0 | 786 | |
| SQC012125 | 1C (VP3) | 1426 | 2142 | 0 | 0 | 717 | |
| SQC012126 | 1D (VP1) | 2143 | 2961 | 0 | 0 | 819 | |
| SQC012127 | 2A (P2-A) | 2962 | 3387 | 0 | 0 | 426 | |
| SQC012128 | 2B (P2-B) | 3388 | 3684 | 0 | 0 | 297 | |
| SQC012129 | 2C (P2-C) | 3685 | 4662 | 0 | 0 | 978 | |
| SQC012130 | 3'UTR | 6886 | 0 | 0 | 1 | 43 | |
| SQC012131 | 3A (P3-A) | 4663 | 4887 | 0 | 0 | 225 | |
| SQC012132 | 3B (VPg) | 4888 | 4953 | 0 | 0 | 66 | |
| SQC012133 | 3D | 5503 | 6882 | 0 | 0 | 1380 | |
| SQC012134 | 5'UTR | 0 | 438 | 1 | 0 | 438 | |
| SQC012135 | CDS | 439 | 6885 | 0 | 0 | 6447 | |
| SQC012136 | protease 3C | 4954 | 5502 | 0 | 0 | 549 | |
| SQC012137 | VP4/2 | 439 | 869 | 0 | 0 | 431 | |
| SQC012138 | genome | 1 | 6928 | 1 | 1 | 6928 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC003903 | CDS | 1 | 2148 | 0 | 0 | 2148 | |
| SPC003904 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC003905 | 3D | 1689 | 2148 | 0 | 0 | 460 | |
| SPC003906 | 2C (P2-C) | 1083 | 1408 | 0 | 0 | 326 | |
| SPC003907 | 1D (VP1) | 569 | 841 | 0 | 0 | 273 | |
| SPC003908 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC003909 | 1C (VP3) | 330 | 568 | 0 | 0 | 239 | |
| SPC003910 | protease 3C | 1506 | 1688 | 0 | 0 | 183 | |
| SPC003911 | 2A (P2-A) | 842 | 983 | 0 | 0 | 142 | |
| SPC003912 | 2B (P2-B) | 984 | 1082 | 0 | 0 | 99 | |
| SPC003913 | 3A (P3-A) | 1409 | 1483 | 0 | 0 | 75 | |
| SPC003914 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC003915 | 3B (VPg) | 1484 | 1505 | 0 | 0 | 22 |