| RVdb StrainID | CNP04172 | GenBank Accession | KF958310.1 |
| Species | RVC | Sequence Length | 7087 nt |
| Serotype | 2 Checked by RVdb | Serotype (GenBank) | 2 |
| Definition | Rhinovirus C isolate 6331, complete genome | GenBank Submission Date | 2022-11-03 |
| Strain Name | 6331 | Sampling Date | 1999-12-10 |
| Sampling Country | USA | Sampling location | Madison |
| Isolation Source | -N/A- | NCBI Taxon ID | 463676 |
| Sequencing Technology | Sanger dideoxy sequencing | Assembly Method | DNAStar SeqMan Pro v. 9.1 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC012059 | 1A (VP4) | 611 | 811 | 0 | 0 | 201 | |
| SQC012060 | 1B (VP2) | 812 | 1597 | 0 | 0 | 786 | |
| SQC012061 | 1C (VP3) | 1598 | 2308 | 0 | 0 | 711 | |
| SQC012062 | 1D (VP1) | 2309 | 3121 | 0 | 0 | 813 | |
| SQC012063 | 2A (P2-A) | 3122 | 3547 | 0 | 0 | 426 | |
| SQC012064 | 2B (P2-B) | 3548 | 3841 | 0 | 0 | 294 | |
| SQC012065 | 2C (P2-C) | 3842 | 4822 | 0 | 0 | 981 | |
| SQC012066 | 3'UTR | 7046 | 7087 | 0 | 0 | 42 | |
| SQC012067 | 3A (P3-A) | 4823 | 5047 | 0 | 0 | 225 | |
| SQC012068 | 3B (VPg) | 5048 | 5113 | 0 | 0 | 66 | |
| SQC012069 | 3D | 5663 | 7042 | 0 | 0 | 1380 | |
| SQC012070 | 5'UTR | 1 | 610 | 0 | 0 | 610 | |
| SQC012071 | CDS | 611 | 7045 | 0 | 0 | 6435 | |
| SQC012072 | protease 3C | 5114 | 5662 | 0 | 0 | 549 | |
| SQC012073 | VP4/2 | 611 | 1041 | 0 | 0 | 431 | |
| SQC012074 | genome | 1 | 7087 | 0 | 0 | 7087 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC004298 | CDS | 1 | 2144 | 0 | 0 | 2144 | |
| SPC004299 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC004300 | 3D | 1685 | 2144 | 0 | 0 | 460 | |
| SPC004301 | 2C (P2-C) | 1078 | 1404 | 0 | 0 | 327 | |
| SPC004302 | 1D (VP1) | 567 | 837 | 0 | 0 | 271 | |
| SPC004303 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC004304 | 1C (VP3) | 330 | 566 | 0 | 0 | 237 | |
| SPC004305 | protease 3C | 1502 | 1684 | 0 | 0 | 183 | |
| SPC004306 | 2A (P2-A) | 838 | 979 | 0 | 0 | 142 | |
| SPC004307 | 2B (P2-B) | 980 | 1077 | 0 | 0 | 98 | |
| SPC004308 | 3A (P3-A) | 1405 | 1479 | 0 | 0 | 75 | |
| SPC004309 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC004310 | 3B (VPg) | 1480 | 1501 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 24636084 | Effects of rhinovirus species on viral replication and cytokine production. | 2014 | J Allergy Clin Immunol | View More |