RVdb StrainID CNP01877 GenBank Accession MH685696.1
Species RVC Sequence Length 6972 nt
Serotype 34  Added by RVdb Serotype (GenBank) -N/A-
Definition Rhinovirus C isolate E0-165 polyprotein gene, partial cds GenBank Submission Date 2022-11-06
Strain Name E0-165 Sampling Date 2013
Sampling Country Uganda Sampling location Tororo District Hospital
Isolation Source nasopharynx NCBI Taxon ID 463676
Sequencing Technology -N/A- Assembly Method -N/A-

Download selected NT sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SQC010761 1A (VP4) 551 757 0 0 207
SQC010762 1B (VP2) 758 1537 0 0 780
SQC010763 1C (VP3) 1538 2254 0 0 717
SQC010764 1D (VP1) 2255 3082 0 0 828
SQC010765 2A (P2-A) 3083 3508 0 0 426
SQC010766 2B (P2-B) 3509 3805 0 0 297
SQC010767 2C (P2-C) 3806 4783 0 0 978
SQC010768 3A (P3-A) 4784 5008 0 0 225
SQC010769 3B (VPg) 5009 5074 0 0 66
SQC010770 3D 5624 0 0 1 1349
SQC010771 5'UTR 0 550 1 0 550
SQC010772 CDS 551 0 0 1 6422
SQC010773 protease 3C 5075 5623 0 0 549
SQC010774 VP4/2 551 981 0 0 431
Download selected AA sequences
SeqID Gene Name Start End StartTruncated EndTruncated Length
SPC008375 CDS 1 2140 0 0 2140
SPC008376 VP4/2 1 145 0 0 145
SPC008377 3D 1692 2140 0 1 449
SPC008378 2C (P2-C) 1086 1411 0 0 326
SPC008379 1D (VP1) 569 844 0 0 276
SPC008380 1B (VP2) 68 329 0 0 262
SPC008381 1C (VP3) 330 568 0 0 239
SPC008382 protease 3C 1509 1691 0 0 183
SPC008383 2A (P2-A) 845 986 0 0 142
SPC008384 2B (P2-B) 987 1085 0 0 99
SPC008385 3A (P3-A) 1412 1486 0 0 75
SPC008386 1A (VP4) 1 67 0 0 67
SPC008387 3B (VPg) 1487 1508 0 0 22
PMID Title Publication Year Journal View in RVdb
31220115 Metagenomic next-generation sequencing of samples from pediatric febrile illness in Tororo, Uganda. 2019 PLoS One View More