| RVdb StrainID | CNP01877 | GenBank Accession | MH685696.1 |
| Species | RVC | Sequence Length | 6972 nt |
| Serotype | 34 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Rhinovirus C isolate E0-165 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | E0-165 | Sampling Date | 2013 |
| Sampling Country | Uganda | Sampling location | Tororo District Hospital |
| Isolation Source | nasopharynx | NCBI Taxon ID | 463676 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC010761 | 1A (VP4) | 551 | 757 | 0 | 0 | 207 | |
| SQC010762 | 1B (VP2) | 758 | 1537 | 0 | 0 | 780 | |
| SQC010763 | 1C (VP3) | 1538 | 2254 | 0 | 0 | 717 | |
| SQC010764 | 1D (VP1) | 2255 | 3082 | 0 | 0 | 828 | |
| SQC010765 | 2A (P2-A) | 3083 | 3508 | 0 | 0 | 426 | |
| SQC010766 | 2B (P2-B) | 3509 | 3805 | 0 | 0 | 297 | |
| SQC010767 | 2C (P2-C) | 3806 | 4783 | 0 | 0 | 978 | |
| SQC010768 | 3A (P3-A) | 4784 | 5008 | 0 | 0 | 225 | |
| SQC010769 | 3B (VPg) | 5009 | 5074 | 0 | 0 | 66 | |
| SQC010770 | 3D | 5624 | 0 | 0 | 1 | 1349 | |
| SQC010771 | 5'UTR | 0 | 550 | 1 | 0 | 550 | |
| SQC010772 | CDS | 551 | 0 | 0 | 1 | 6422 | |
| SQC010773 | protease 3C | 5075 | 5623 | 0 | 0 | 549 | |
| SQC010774 | VP4/2 | 551 | 981 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC008375 | CDS | 1 | 2140 | 0 | 0 | 2140 | |
| SPC008376 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC008377 | 3D | 1692 | 2140 | 0 | 1 | 449 | |
| SPC008378 | 2C (P2-C) | 1086 | 1411 | 0 | 0 | 326 | |
| SPC008379 | 1D (VP1) | 569 | 844 | 0 | 0 | 276 | |
| SPC008380 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC008381 | 1C (VP3) | 330 | 568 | 0 | 0 | 239 | |
| SPC008382 | protease 3C | 1509 | 1691 | 0 | 0 | 183 | |
| SPC008383 | 2A (P2-A) | 845 | 986 | 0 | 0 | 142 | |
| SPC008384 | 2B (P2-B) | 987 | 1085 | 0 | 0 | 99 | |
| SPC008385 | 3A (P3-A) | 1412 | 1486 | 0 | 0 | 75 | |
| SPC008386 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC008387 | 3B (VPg) | 1487 | 1508 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 31220115 | Metagenomic next-generation sequencing of samples from pediatric febrile illness in Tororo, Uganda. | 2019 | PLoS One | View More |