| RVdb StrainID | CNP01867 | GenBank Accession | MH685707.1 |
| Species | RVC | Sequence Length | 6189 nt |
| Serotype | 14 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Rhinovirus C isolate E0-14 polyprotein gene, partial cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | E0-14 | Sampling Date | 2013 |
| Sampling Country | Uganda | Sampling location | Tororo District Hospital |
| Isolation Source | nasopharynx | NCBI Taxon ID | 463676 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC010746 | 1A (VP4) | 0 | 0 | 1 | 1 | 2 | |
| SQC010747 | 1B (VP2) | 0 | 701 | 1 | 0 | 701 | |
| SQC010748 | 1C (VP3) | 702 | 1412 | 0 | 0 | 711 | |
| SQC010749 | 1D (VP1) | 1413 | 2228 | 0 | 0 | 816 | |
| SQC010750 | 2A (P2-A) | 2229 | 2654 | 0 | 0 | 426 | |
| SQC010751 | 2B (P2-B) | 2655 | 2951 | 0 | 0 | 297 | |
| SQC010752 | 2C (P2-C) | 2952 | 3929 | 0 | 0 | 978 | |
| SQC010753 | 3'UTR | 6153 | 0 | 0 | 1 | 37 | |
| SQC010754 | 3A (P3-A) | 3930 | 4154 | 0 | 0 | 225 | |
| SQC010755 | 3B (VPg) | 4155 | 4220 | 0 | 0 | 66 | |
| SQC010756 | 3D | 4770 | 6149 | 0 | 0 | 1380 | |
| SQC010757 | CDS | 0 | 6152 | 1 | 0 | 6152 | |
| SQC010758 | protease 3C | 4221 | 4769 | 0 | 0 | 549 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC008458 | CDS | 1 | 2049 | 0 | 0 | 2049 | |
| SPC008459 | 3D | 1590 | 2049 | 0 | 0 | 460 | |
| SPC008460 | 2C (P2-C) | 984 | 1309 | 0 | 0 | 326 | |
| SPC008461 | 1D (VP1) | 471 | 742 | 0 | 0 | 272 | |
| SPC008462 | 1C (VP3) | 234 | 470 | 0 | 0 | 237 | |
| SPC008463 | 1B (VP2) | 1 | 233 | 1 | 0 | 233 | |
| SPC008464 | protease 3C | 1407 | 1589 | 0 | 0 | 183 | |
| SPC008465 | 2A (P2-A) | 743 | 884 | 0 | 0 | 142 | |
| SPC008466 | 2B (P2-B) | 885 | 983 | 0 | 0 | 99 | |
| SPC008467 | 3A (P3-A) | 1310 | 1384 | 0 | 0 | 75 | |
| SPC008468 | 3B (VPg) | 1385 | 1406 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 31220115 | Metagenomic next-generation sequencing of samples from pediatric febrile illness in Tororo, Uganda. | 2019 | PLoS One | View More |