| RVdb StrainID | CNP01222 | GenBank Accession | MT641410.1 |
| Species | RVC | Sequence Length | 3886 nt |
| Serotype | 42 Added by RVdb | Serotype (GenBank) | -N/A- |
| Definition | Rhinovirus C strain CLI-B3-21-RhinoC polyprotein gene, partial cds | GenBank Submission Date | 2022-11-03 |
| Strain Name | CLI-B3-21-RhinoC | Sampling Date | 2018-06-20 |
| Sampling Country | United Kingdom | Sampling location | Public Health England (PHE) |
| Isolation Source | respiratory | NCBI Taxon ID | 463676 |
| Sequencing Technology | Illumina | Assembly Method | Geneious v. 2020.0.3 |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC010484 | 1A (VP4) | 82 | 282 | 0 | 0 | 201 | |
| SQC010485 | 1B (VP2) | 283 | 1077 | 0 | 0 | 795 | |
| SQC010486 | 1C (VP3) | 1078 | 1794 | 0 | 0 | 717 | |
| SQC010487 | 1D (VP1) | 1795 | 2616 | 0 | 0 | 822 | |
| SQC010488 | 2A (P2-A) | 2617 | 3042 | 0 | 0 | 426 | |
| SQC010489 | 2B (P2-B) | 3043 | 3339 | 0 | 0 | 297 | |
| SQC010490 | CDS | 82 | 0 | 0 | 1 | 3805 | |
| SQC010491 | VP4/2 | 82 | 512 | 0 | 0 | 431 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC011564 | CDS | 1 | 1268 | 0 | 1 | 1268 | |
| SPC011565 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC011566 | 1D (VP1) | 571 | 845 | 0 | 0 | 275 | |
| SPC011567 | 1B (VP2) | 68 | 332 | 0 | 0 | 265 | |
| SPC011568 | 1C (VP3) | 333 | 570 | 0 | 0 | 238 | |
| SPC011569 | 2A (P2-A) | 846 | 987 | 0 | 0 | 142 | |
| SPC011570 | 2B (P2-B) | 988 | 1086 | 0 | 0 | 99 | |
| SPC011571 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 33918088 | Detection and Typing of Human Enteroviruses from Clinical Samples by Entire-Capsid Next Generation Sequencing. | 2021 | Viruses | View More |