| RVdb StrainID | CNP00062 | GenBank Accession | OL961524.1 |
| Species | RVC | Sequence Length | 7060 nt |
| Serotype | 13 Checked by RVdb | Serotype (GenBank) | 13 |
| Definition | Rhinovirus C13 strain RvC13/USA/2021/CKHXZD, complete genome | GenBank Submission Date | 2022-11-06 |
| Strain Name | RvC13/USA/2021/CKHXZD | Sampling Date | 2021 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 2777132 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC009095 | 1A (VP4) | 572 | 772 | 0 | 0 | 201 | |
| SQC009096 | 1B (VP2) | 773 | 1564 | 0 | 0 | 792 | |
| SQC009097 | 1C (VP3) | 1565 | 2263 | 0 | 0 | 699 | |
| SQC009098 | 1D (VP1) | 2264 | 3079 | 0 | 0 | 816 | |
| SQC009099 | 2A (P2-A) | 3080 | 3502 | 0 | 0 | 423 | |
| SQC009100 | 2B (P2-B) | 3503 | 3799 | 0 | 0 | 297 | |
| SQC009101 | 2C (P2-C) | 3800 | 4774 | 0 | 0 | 975 | |
| SQC009102 | 3'UTR | 7001 | 7060 | 0 | 0 | 60 | |
| SQC009103 | 3A (P3-A) | 4775 | 5002 | 0 | 0 | 228 | |
| SQC009104 | 3B (VPg) | 5003 | 5068 | 0 | 0 | 66 | |
| SQC009105 | 3D | 5618 | 6997 | 0 | 0 | 1380 | |
| SQC009106 | 5'UTR | 0 | 571 | 1 | 0 | 571 | |
| SQC009107 | CDS | 572 | 7000 | 0 | 0 | 6429 | |
| SQC009108 | protease 3C | 5069 | 5617 | 0 | 0 | 549 | |
| SQC009109 | VP4/2 | 572 | 1002 | 0 | 0 | 431 | |
| SQC009110 | genome | 1 | 7060 | 1 | 0 | 7060 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC016081 | CDS | 1 | 2142 | 0 | 0 | 2142 | |
| SPC016082 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC016083 | 3D | 1683 | 2142 | 0 | 0 | 460 | |
| SPC016084 | 2C (P2-C) | 1077 | 1401 | 0 | 0 | 325 | |
| SPC016085 | 1D (VP1) | 562 | 836 | 0 | 0 | 275 | |
| SPC016086 | 1B (VP2) | 68 | 331 | 0 | 0 | 264 | |
| SPC016087 | 1C (VP3) | 332 | 561 | 0 | 0 | 230 | |
| SPC016088 | protease 3C | 1500 | 1682 | 0 | 0 | 183 | |
| SPC016089 | 2A (P2-A) | 837 | 977 | 0 | 0 | 141 | |
| SPC016090 | 2B (P2-B) | 978 | 1076 | 0 | 0 | 99 | |
| SPC016091 | 3A (P3-A) | 1402 | 1477 | 0 | 0 | 76 | |
| SPC016092 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC016093 | 3B (VPg) | 1478 | 1499 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |