| RVdb StrainID | CNP00027 | GenBank Accession | ON311167.1 |
| Species | RVC | Sequence Length | 7086 nt |
| Serotype | 20 Corrected by RVdb | Serotype (GenBank) | 34 |
| Definition | Rhinovirus C34 strain C20_1 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | C20_1 | Sampling Date | 2021-02-06 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 2045075 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC008994 | 1A (VP4) | 582 | 782 | 0 | 0 | 201 | |
| SQC008995 | 1B (VP2) | 783 | 1568 | 0 | 0 | 786 | |
| SQC008996 | 1C (VP3) | 1569 | 2285 | 0 | 0 | 717 | |
| SQC008997 | 1D (VP1) | 2286 | 3107 | 0 | 0 | 822 | |
| SQC008998 | 2A (P2-A) | 3108 | 3533 | 0 | 0 | 426 | |
| SQC008999 | 2B (P2-B) | 3534 | 3830 | 0 | 0 | 297 | |
| SQC009000 | 2C (P2-C) | 3831 | 4808 | 0 | 0 | 978 | |
| SQC009001 | 3A (P3-A) | 4809 | 5033 | 0 | 0 | 225 | |
| SQC009002 | 3B (VPg) | 5034 | 5099 | 0 | 0 | 66 | |
| SQC009003 | 3D | 5649 | 7028 | 0 | 0 | 1380 | |
| SQC009004 | 5'UTR | 0 | 581 | 1 | 0 | 581 | |
| SQC009005 | CDS | 582 | 7031 | 0 | 0 | 6450 | |
| SQC009006 | protease 3C | 5100 | 5648 | 0 | 0 | 549 | |
| SQC009007 | VP4/2 | 582 | 1012 | 0 | 0 | 431 | |
| SQC009008 | genome | 1 | 7086 | 1 | 1 | 7086 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC017582 | CDS | 1 | 2149 | 0 | 0 | 2149 | |
| SPC017583 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC017584 | 3D | 1690 | 2149 | 0 | 0 | 460 | |
| SPC017585 | 2C (P2-C) | 1084 | 1409 | 0 | 0 | 326 | |
| SPC017586 | 1D (VP1) | 569 | 842 | 0 | 0 | 274 | |
| SPC017587 | 1B (VP2) | 68 | 329 | 0 | 0 | 262 | |
| SPC017588 | 1C (VP3) | 330 | 568 | 0 | 0 | 239 | |
| SPC017589 | protease 3C | 1507 | 1689 | 0 | 0 | 183 | |
| SPC017590 | 2A (P2-A) | 843 | 984 | 0 | 0 | 142 | |
| SPC017591 | 2B (P2-B) | 985 | 1083 | 0 | 0 | 99 | |
| SPC017592 | 3A (P3-A) | 1410 | 1484 | 0 | 0 | 75 | |
| SPC017593 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC017594 | 3B (VPg) | 1485 | 1506 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |