| RVdb StrainID | CNP00022 | GenBank Accession | ON311172.1 |
| Species | RVC | Sequence Length | 7031 nt |
| Serotype | 15 Checked by RVdb | Serotype (GenBank) | 15 |
| Definition | Rhinovirus C15 strain C15_3 polyprotein gene, complete cds | GenBank Submission Date | 2022-11-06 |
| Strain Name | C15_3 | Sampling Date | 2021-01-11 |
| Sampling Country | USA | Sampling location | King County, Washington |
| Isolation Source | -N/A- | NCBI Taxon ID | 1418033 |
| Sequencing Technology | -N/A- | Assembly Method | -N/A- |
Download selected NT sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SQC008978 | 1A (VP4) | 531 | 731 | 0 | 0 | 201 | |
| SQC008979 | 1B (VP2) | 732 | 1526 | 0 | 0 | 795 | |
| SQC008980 | 1C (VP3) | 1527 | 2240 | 0 | 0 | 714 | |
| SQC008981 | 1D (VP1) | 2241 | 3068 | 0 | 0 | 828 | |
| SQC008982 | 2A (P2-A) | 3069 | 3494 | 0 | 0 | 426 | |
| SQC008983 | 2B (P2-B) | 3495 | 3791 | 0 | 0 | 297 | |
| SQC008984 | 2C (P2-C) | 3792 | 4769 | 0 | 0 | 978 | |
| SQC008985 | 3'UTR | 6993 | 0 | 0 | 1 | 39 | |
| SQC008986 | 3A (P3-A) | 4770 | 4994 | 0 | 0 | 225 | |
| SQC008987 | 3B (VPg) | 4995 | 5060 | 0 | 0 | 66 | |
| SQC008988 | 3D | 5610 | 6989 | 0 | 0 | 1380 | |
| SQC008989 | 5'UTR | 0 | 530 | 1 | 0 | 530 | |
| SQC008990 | CDS | 531 | 6992 | 0 | 0 | 6462 | |
| SQC008991 | protease 3C | 5061 | 5609 | 0 | 0 | 549 | |
| SQC008992 | VP4/2 | 531 | 961 | 0 | 0 | 431 | |
| SQC008993 | genome | 1 | 7031 | 1 | 1 | 7031 |
Download selected AA sequences
| SeqID | Gene Name | Start | End | StartTruncated | EndTruncated | Length | |
|---|---|---|---|---|---|---|---|
| SPC017647 | CDS | 1 | 2153 | 0 | 0 | 2153 | |
| SPC017648 | VP4/2 | 1 | 145 | 0 | 0 | 145 | |
| SPC017649 | 3D | 1694 | 2153 | 0 | 0 | 460 | |
| SPC017650 | 2C (P2-C) | 1088 | 1413 | 0 | 0 | 326 | |
| SPC017651 | 1D (VP1) | 568 | 846 | 0 | 0 | 279 | |
| SPC017652 | 1B (VP2) | 68 | 332 | 0 | 0 | 265 | |
| SPC017653 | 1C (VP3) | 333 | 567 | 0 | 0 | 235 | |
| SPC017654 | protease 3C | 1511 | 1693 | 0 | 0 | 183 | |
| SPC017655 | 2A (P2-A) | 847 | 988 | 0 | 0 | 142 | |
| SPC017656 | 2B (P2-B) | 989 | 1087 | 0 | 0 | 99 | |
| SPC017657 | 3A (P3-A) | 1414 | 1488 | 0 | 0 | 75 | |
| SPC017658 | 1A (VP4) | 1 | 67 | 0 | 0 | 67 | |
| SPC017659 | 3B (VPg) | 1489 | 1510 | 0 | 0 | 22 |
| PMID | Title | Publication Year | Journal | View in RVdb |
|---|---|---|---|---|
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | 2022 | J Infect Dis | View More |